View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20803_low_36 (Length: 312)
Name: NF20803_low_36
Description: NF20803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20803_low_36 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 10 - 312
Target Start/End: Complemental strand, 33409936 - 33409632
Alignment:
| Q |
10 |
aagaatatatgaaaaataaatagggggaggcgcttccttattat---gaaacatgacatccatggnnnnnnntgagagaaaaactactaaccggtgtatt |
106 |
Q |
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| T |
33409936 |
aagaatatatgaaaaataaatagggggaggcgcttccttattattatgaaacatgacatccatg-aaaaaaatgagagaaaaaatactaaccggtgtatt |
33409838 |
T |
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| Q |
107 |
gatgaacataaaattgtatacataagttaaagttctattctaatgaggtggttacaaactatttatattttatactattatctattaggactaaaatgta |
206 |
Q |
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| T |
33409837 |
gatgaacataaaattgtatacataagttaaagttctattctaataaggtggttacaaactatttatgttttatactattatctattaggactaaaatgta |
33409738 |
T |
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| Q |
207 |
agtaactaatttatatctccgatacttgttacattagaatttcatgtaaaatatataaaaattcctagtctataaaagacacaaataattagggaggtcc |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33409737 |
agtaactaatttatatctccgatacttgttacattagaatttcatgtaaaatatataaaaattcctagtctataaaagacacaaataattagggaggtcc |
33409638 |
T |
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| Q |
307 |
tcctct |
312 |
Q |
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|||||| |
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| T |
33409637 |
tcctct |
33409632 |
T |
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