View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20803_low_40 (Length: 298)

Name: NF20803_low_40
Description: NF20803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20803_low_40
NF20803_low_40
[»] chr2 (12 HSPs)
chr2 (27-281)||(30857691-30857939)
chr2 (223-285)||(35315297-35315359)
chr2 (222-285)||(35316828-35316891)
chr2 (219-285)||(19908780-19908846)
chr2 (222-285)||(28564895-28564958)
chr2 (223-285)||(38397085-38397147)
chr2 (222-285)||(13238684-13238747)
chr2 (222-285)||(23259496-23259559)
chr2 (219-285)||(374993-375059)
chr2 (219-285)||(21454504-21454569)
chr2 (219-285)||(30709110-30709176)
chr2 (216-248)||(33205799-33205831)
[»] chr8 (11 HSPs)
chr8 (222-285)||(10672521-10672584)
chr8 (215-285)||(21486301-21486369)
chr8 (222-285)||(24102019-24102082)
chr8 (222-285)||(30426678-30426741)
chr8 (221-255)||(21486925-21486959)
chr8 (222-285)||(28069722-28069785)
chr8 (217-284)||(36748502-36748568)
chr8 (222-285)||(36991359-36991422)
chr8 (223-285)||(24557190-24557252)
chr8 (219-285)||(26749557-26749623)
chr8 (219-285)||(42761713-42761779)
[»] chr3 (10 HSPs)
chr3 (223-282)||(10474450-10474509)
chr3 (222-282)||(19830443-19830503)
chr3 (219-285)||(1995444-1995510)
chr3 (223-259)||(47914202-47914238)
chr3 (222-285)||(2229986-2230049)
chr3 (222-285)||(34373594-34373657)
chr3 (222-285)||(43719956-43720019)
chr3 (220-285)||(4659282-4659348)
chr3 (219-285)||(25285846-25285912)
chr3 (219-285)||(31523677-31523743)
[»] chr5 (17 HSPs)
chr5 (223-285)||(29340999-29341061)
chr5 (216-284)||(25879592-25879660)
chr5 (222-285)||(4895744-4895807)
chr5 (222-285)||(11775796-11775859)
chr5 (226-285)||(27428890-27428949)
chr5 (222-261)||(28142808-28142847)
chr5 (222-285)||(35660618-35660681)
chr5 (216-285)||(3057413-3057482)
chr5 (216-285)||(18653358-18653427)
chr5 (222-285)||(3057163-3057226)
chr5 (222-285)||(14349806-14349869)
chr5 (222-285)||(18625430-18625493)
chr5 (222-285)||(32129626-32129689)
chr5 (222-285)||(34827195-34827258)
chr5 (222-285)||(37266734-37266797)
chr5 (222-284)||(40753172-40753234)
chr5 (219-285)||(43309108-43309174)
[»] chr4 (14 HSPs)
chr4 (215-285)||(1871273-1871343)
chr4 (222-285)||(34778424-34778487)
chr4 (222-285)||(19901927-19901990)
chr4 (223-285)||(23474115-23474177)
chr4 (219-285)||(37002260-37002326)
chr4 (219-284)||(40215455-40215520)
chr4 (222-285)||(5416475-5416537)
chr4 (222-285)||(5763171-5763234)
chr4 (219-270)||(31862244-31862295)
chr4 (222-285)||(33262561-33262624)
chr4 (222-285)||(56558282-56558345)
chr4 (219-261)||(52030727-52030769)
chr4 (219-285)||(56269085-56269151)
chr4 (219-285)||(56453829-56453895)
[»] scaffold0250 (1 HSPs)
scaffold0250 (222-285)||(7150-7213)
[»] chr7 (12 HSPs)
chr7 (222-285)||(32915959-32916022)
chr7 (222-285)||(4888470-4888533)
chr7 (222-285)||(25084737-25084800)
chr7 (219-284)||(40023266-40023331)
chr7 (222-285)||(12139329-12139393)
chr7 (222-285)||(9559063-9559126)
chr7 (222-285)||(16366521-16366584)
chr7 (222-285)||(21151155-21151218)
chr7 (222-285)||(45260436-45260499)
chr7 (215-285)||(989125-989195)
chr7 (219-285)||(47799909-47799975)
chr7 (222-282)||(18198259-18198319)
[»] chr6 (9 HSPs)
chr6 (219-285)||(2800620-2800686)
chr6 (222-285)||(4804451-4804514)
chr6 (222-285)||(7162087-7162150)
chr6 (222-285)||(27826541-27826604)
chr6 (219-285)||(12734410-12734475)
chr6 (222-276)||(29698166-29698220)
chr6 (215-260)||(2720369-2720414)
chr6 (222-282)||(21159381-21159441)
chr6 (223-285)||(17828577-17828639)
[»] chr1 (10 HSPs)
chr1 (215-268)||(5047407-5047460)
chr1 (219-284)||(32887790-32887855)
chr1 (219-285)||(26372252-26372318)
chr1 (223-268)||(32618805-32618850)
chr1 (219-287)||(24413289-24413357)
chr1 (218-274)||(49943989-49944045)
chr1 (222-285)||(12151770-12151833)
chr1 (222-280)||(12380924-12380982)
chr1 (222-280)||(12384991-12385049)
chr1 (219-285)||(39426210-39426276)
[»] scaffold0126 (1 HSPs)
scaffold0126 (222-285)||(22451-22514)


Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 27 - 281
Target Start/End: Complemental strand, 30857939 - 30857691
Alignment:
Q  27 tatagattatgttatttggtccctacatttagaaaataaaattaatctatgaaattgaatgtcatcaatccattcactcagttcattatttgatttgagt 126  Q
    |||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30857939 tatatattatcttatttggtccgtacatttagaaaataaaattaatctatgaaattgaatgtcatcaatccattcactcagttcattatttgatttgagt 30857840  T
Q  127 aagaacacattgtttaagacatgttcaattggaccatgtttttggaaatttattgaagactttcttaatagtttgaaaacaaaatactatataaaataat 226  Q
    ||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||| ||      ||||||||||||    
T  30857839 aagaacacattgtttaagacatgttcaattggagcatttttgtggaaatttattgaagactttcttaatagtttgaaaaaaa------atataaaataat 30857746  T
Q  227 taatgatggtgggactcacttaatagtaggatccattatctactttttgtgtcta 281  Q
    ||||||||||| ||  || ||||||||||||||||||||||| ||||||||||||    
T  30857745 taatgatggtgtgatccatttaatagtaggatccattatctattttttgtgtcta 30857691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 223 - 285
Target Start/End: Complemental strand, 35315359 - 35315297
Alignment:
Q  223 taattaatgatggtgggactcacttaatagtaggatccattatctactttttgtgtctatctc 285  Q
    |||||||| ||||||||||||| ||||||||| ||||||||||||| ||| ||||||||||||    
T  35315359 taattaataatggtgggactcaattaatagtaagatccattatctattttatgtgtctatctc 35315297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 222 - 285
Target Start/End: Original strand, 35316828 - 35316891
Alignment:
Q  222 ataattaatgatggtgggactcacttaatagtaggatccattatctactttttgtgtctatctc 285  Q
    |||||||||||||||||||| |||||| | ||||||||||  ||||| ||||||||||||||||    
T  35316828 ataattaatgatggtgggacccacttagtggtaggatccaccatctattttttgtgtctatctc 35316891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 219 - 285
Target Start/End: Original strand, 19908780 - 19908846
Alignment:
Q  219 aaaataattaatgatggtgggactcacttaatagtaggatccattatctactttttgtgtctatctc 285  Q
    ||||||||||||||||||||||| ||||||| |||||||  || |||||| ||| ||||||||||||    
T  19908780 aaaataattaatgatggtgggacccacttaaaagtaggactcactatctattttatgtgtctatctc 19908846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 285
Target Start/End: Original strand, 28564895 - 28564958
Alignment:
Q  222 ataattaatgatggtgggactcacttaatagtaggatccattatctactttttgtgtctatctc 285  Q
    |||||||||||||||||||| |||||| | |||||| |||  ||||| ||||||||||||||||    
T  28564895 ataattaatgatggtgggacccacttagtggtaggacccaccatctattttttgtgtctatctc 28564958  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 285
Target Start/End: Original strand, 38397085 - 38397147
Alignment:
Q  223 taattaatgatggtgggactcacttaatagtaggatccattatctactttttgtgtctatctc 285  Q
    |||||| |||||||||||||||||||||||||| | ||| |||||| ||| | ||||||||||    
T  38397085 taattattgatggtgggactcacttaatagtagcacccactatctattttatttgtctatctc 38397147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 285
Target Start/End: Original strand, 13238684 - 13238747
Alignment:
Q  222 ataattaatgatggtgggactcacttaatagtaggatccattatctactttttgtgtctatctc 285  Q
    |||||||||||||||||||| |||||  | |||||| |||  ||||| ||||||||||||||||    
T  13238684 ataattaatgatggtgggacccacttggtggtaggacccaccatctattttttgtgtctatctc 13238747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 285
Target Start/End: Complemental strand, 23259559 - 23259496
Alignment:
Q  222 ataattaatgatggtgggactcacttaatagtaggatccattatctactttttgtgtctatctc 285  Q
    |||||||||||||||||||  |||||| |||||||| |||  | ||| ||||||||||||||||    
T  23259559 ataattaatgatggtgggatccacttagtagtaggacccaccagctattttttgtgtctatctc 23259496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 285
Target Start/End: Original strand, 374993 - 375059
Alignment:
Q  219 aaaataattaatgatggtgggactcacttaatagtaggatccattatctactttttgtgtctatctc 285  Q
    ||||||||||||||||||||||| |||||| || ||||| |||  |  || ||||||||||||||||    
T  374993 aaaataattaatgatggtgggacccacttagtaataggacccaccacttattttttgtgtctatctc 375059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 285
Target Start/End: Complemental strand, 21454569 - 21454504
Alignment:
Q  219 aaaataattaatgatggtgggactcacttaatagtaggatccattatctactttttgtgtctatctc 285  Q
    |||||||||||||||||||| || |||||||| ||| || |||  ||||| ||||||||||||||||    
T  21454569 aaaataattaatgatggtggaacccacttaatggtatgacccacaatcta-tttttgtgtctatctc 21454504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 285
Target Start/End: Original strand, 30709110 - 30709176
Alignment:
Q  219 aaaataattaatgatggtgggactcacttaatagtaggatccattatctactttttgtgtctatctc 285  Q
    |||| |||||||||||||||||  |||||| | |||||| ||| |||||| ||| ||||||||||||    
T  30709110 aaaacaattaatgatggtgggatccacttagtggtaggacccaatatctattttatgtgtctatctc 30709176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 248
Target Start/End: Original strand, 33205799 - 33205831
Alignment:
Q  216 tataaaataattaatgatggtgggactcactta 248  Q
    ||||||||||||||||||||||| |||||||||    
T  33205799 tataaaataattaatgatggtggaactcactta 33205831  T

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Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 222 - 285
Target Start/End: Complemental strand, 10672584 - 10672521
Alignment:
Q  222 ataattaatgatggtgggactcacttaatagtaggatccattatctactttttgtgtctatctc 285  Q
    ||||||||||||||||||||||||||| | ||||||||||  ||||| ||||||||||||||||    
T  10672584 ataattaatgatggtgggactcacttagtggtaggatccaccatctattttttgtgtctatctc 10672521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 285
Target Start/End: Complemental strand, 21486369 - 21486301
Alignment:
Q  215 atataaaataattaatgatggtgggactcacttaatagtaggatccattatctactttttgtgtctatctc 285  Q
    ||||||||||||||||||||||| |||| ||||| | ||| |||| ||||||||  |||||||||||||||    
T  21486369 atataaaataattaatgatggtgagacttacttagtggtaagatctattatcta--ttttgtgtctatctc 21486301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 285
Target Start/End: Original strand, 24102019 - 24102082
Alignment:
Q  222 ataattaatgatggtgggactcacttaatagtaggatccattatctactttttgtgtctatctc 285  Q
    ||||||||||||||||| ||||||||| | ||||||||||  ||||| ||||| ||||||||||    
T  24102019 ataattaatgatggtggaactcacttagtggtaggatccaccatctattttttatgtctatctc 24102082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 285
Target Start/End: Complemental strand, 30426741 - 30426678
Alignment:
Q  222 ataattaatgatggtgggactcacttaatagtaggatccattatctactttttgtgtctatctc 285  Q
    |||||||||||||||||||| |||||| | |||||| |||  ||||| ||||||||||||||||    
T  30426741 ataattaatgatggtgggacccacttagtggtaggacccaccatctattttttgtgtctatctc 30426678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 255
Target Start/End: Original strand, 21486925 - 21486959
Alignment:
Q  221 aataattaatgatggtgggactcacttaatagtag 255  Q
    |||||||||||||||||||||||||||||||||||    
T  21486925 aataattaatgatggtgggactcacttaatagtag 21486959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 285
Target Start/End: Original strand, 28069722 - 28069785
Alignment:
Q  222 ataattaatgatggtgggactcacttaatagtaggatccattatctactttttgtgtctatctc 285  Q
    |||||||||||||||||||| |||||| | |||||| |||  ||||| ||||||||||| ||||    
T  28069722 ataattaatgatggtgggacccacttagtggtaggacccaccatctattttttgtgtctttctc 28069785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 217 - 284
Target Start/End: Complemental strand, 36748568 - 36748502
Alignment:
Q  217 ataaaataattaatgatggtgggactcacttaatagtaggatccattatctactttttgtgtctatct 284  Q
    ||||||||||||||||||||||||  |||||||| |||||| ||  | |||| |||||||||||||||    
T  36748568 ataaaataattaatgatggtgggatccacttaatggtaggacccgctgtcta-tttttgtgtctatct 36748502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 285
Target Start/End: Original strand, 36991359 - 36991422
Alignment:
Q  222 ataattaatgatggtgggactcacttaatagtaggatccattatctactttttgtgtctatctc 285  Q
    |||||||||||||||||||| |||||| | |||||| |||| ||||| || || ||||||||||    
T  36991359 ataattaatgatggtgggacccacttagtggtaggacccatcatctatttcttatgtctatctc 36991422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 285
Target Start/End: Complemental strand, 24557252 - 24557190
Alignment:
Q  223 taattaatgatggtgggactcacttaatagtaggatccattatctactttttgtgtctatctc 285  Q
    |||||||||||| ||||||||||||||| |||||| |||||| ||| ||| ||| | ||||||    
T  24557252 taattaatgatgatgggactcacttaatggtaggacccattacctattttatgtctatatctc 24557190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 285
Target Start/End: Complemental strand, 26749623 - 26749557
Alignment:
Q  219 aaaataattaatgatggtgggactcacttaatagtaggatccattatctactttttgtgtctatctc 285  Q
    ||||||||||||||||||||||| |||||| |  ||||| |||| |  || ||||||||||||||||    
T  26749623 aaaataattaatgatggtgggacccacttagtgataggacccatcacttattttttgtgtctatctc 26749557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 285
Target Start/End: Original strand, 42761713 - 42761779
Alignment:
Q  219 aaaataattaatgatggtgggactcacttaatagtaggatccattatctactttttgtgtctatctc 285  Q
    |||||||||||||||| ||| || |||| | | |||||||||| |||||| ||| ||||||||||||    
T  42761713 aaaataattaatgatgatggaacccactgagtggtaggatccactatctattttatgtgtctatctc 42761779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 223 - 282
Target Start/End: Complemental strand, 10474509 - 10474450
Alignment:
Q  223 taattaatgatggtgggactcacttaatagtaggatccattatctactttttgtgtctat 282  Q
    ||||||||| |||||| ||||||||||||||||||||||||||||| ||| |||||||||    
T  10474509 taattaatgttggtggaactcacttaatagtaggatccattatctattttatgtgtctat 10474450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 222 - 282
Target Start/End: Complemental strand, 19830503 - 19830443
Alignment:
Q  222 ataattaatgatggtgggactcacttaatagtaggatccattatctactttttgtgtctat 282  Q
    |||||||||||||||||||| |||||||| |||||| |||  ||||| |||||||||||||    
T  19830503 ataattaatgatggtgggacccacttaatggtaggacccaccatctattttttgtgtctat 19830443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 285
Target Start/End: Original strand, 1995444 - 1995510
Alignment:
Q  219 aaaataattaatgatggtgggactcacttaatagtaggatccattatctactttttgtgtctatctc 285  Q
    ||||||||||||||||||| |||||||||| | ||||||  ||||||||| ||| | ||||||||||    
T  1995444 aaaataattaatgatggtgagactcacttattggtaggactcattatctattttctatgtctatctc 1995510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 259
Target Start/End: Complemental strand, 47914238 - 47914202
Alignment:
Q  223 taattaatgatggtgggactcacttaatagtaggatc 259  Q
    ||||||||||||||||||||||||||||| |||||||    
T  47914238 taattaatgatggtgggactcacttaataataggatc 47914202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 285
Target Start/End: Original strand, 2229986 - 2230049
Alignment:
Q  222 ataattaatgatggtgggactcacttaatagtaggatccattatctactttttgtgtctatctc 285  Q
    ||||||||||||||||| |  |||||| | |||||| |||| ||||| ||||||||||||||||    
T  2229986 ataattaatgatggtggaaaccacttagtggtaggacccatcatctattttttgtgtctatctc 2230049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 285
Target Start/End: Complemental strand, 34373657 - 34373594
Alignment:
Q  222 ataattaatgatggtgggactcacttaatagtaggatccattatctactttttgtgtctatctc 285  Q
    |||||||||||||||||||| |||||| | |||||| |||  ||||| |||| |||||||||||    
T  34373657 ataattaatgatggtgggacccacttagtggtaggacccaccatctatttttagtgtctatctc 34373594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 285
Target Start/End: Complemental strand, 43720019 - 43719956
Alignment:
Q  222 ataattaatgatggtgggactcacttaatagtaggatccattatctactttttgtgtctatctc 285  Q
    |||||||||||||||||||| |||||| | |||||| |||  || || ||||||||||||||||    
T  43720019 ataattaatgatggtgggacccacttagtggtaggacccacaatttattttttgtgtctatctc 43719956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 285
Target Start/End: Original strand, 4659282 - 4659348
Alignment:
Q  220 aaataattaatgatggtgggactcacttaatagtaggatccattatctact-ttttgtgtctatctc 285  Q
    |||| |||||| ||||||||||||| |||||| || || | |||||||||| |||||||||||||||    
T  4659282 aaattattaataatggtgggactcatttaataatatgacctattatctactattttgtgtctatctc 4659348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 285
Target Start/End: Complemental strand, 25285912 - 25285846
Alignment:
Q  219 aaaataattaatgatggtgggactcacttaatagtaggatccattatctactttttgtgtctatctc 285  Q
    |||| |||| ||||||||||| |||| |||||  ||||||||| |||||| ||| ||||||||||||    
T  25285912 aaaaaaattgatgatggtgggtctcatttaatgataggatccactatctattttatgtgtctatctc 25285846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 285
Target Start/End: Complemental strand, 31523743 - 31523677
Alignment:
Q  219 aaaataattaatgatggtgggactcacttaatagtaggatccattatctactttttgtgtctatctc 285  Q
    ||||||||||||||||||||||| |||||| || ||||| |||  |  || ||||||||||||||||    
T  31523743 aaaataattaatgatggtgggacccacttagtaataggacccaccacttattttttgtgtctatctc 31523677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 223 - 285
Target Start/End: Original strand, 29340999 - 29341061
Alignment:
Q  223 taattaatgatggtgggactcacttaatagtaggatccattatctactttttgtgtctatctc 285  Q
    ||||||||||||||||||| ||||||||||||||| ||| |||||| ||| ||||||||||||    
T  29340999 taattaatgatggtgggacccacttaatagtaggacccactatctattttctgtgtctatctc 29341061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 216 - 284
Target Start/End: Complemental strand, 25879660 - 25879592
Alignment:
Q  216 tataaaataattaatgatggtgggactcacttaatagtaggatccattatctactttttgtgtctatct 284  Q
    |||||||||||||||||||||||||| ||||||||| || | | || |||||||||||||| |||||||    
T  25879660 tataaaataattaatgatggtgggacacacttaataataagtttcactatctactttttgtatctatct 25879592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 285
Target Start/End: Complemental strand, 4895807 - 4895744
Alignment:
Q  222 ataattaatgatggtgggactcacttaatagtaggatccattatctactttttgtgtctatctc 285  Q
    |||||||||||||||||||| |||||| | |||||| |||  ||||| ||||||||||||||||    
T  4895807 ataattaatgatggtgggacccacttagtggtaggacccaccatctattttttgtgtctatctc 4895744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 285
Target Start/End: Original strand, 11775796 - 11775859
Alignment:
Q  222 ataattaatgatggtgggactcacttaatagtaggatccattatctactttttgtgtctatctc 285  Q
    ||||||||||| |||||||| |||||| | ||||||||||  ||||| ||||||||||||||||    
T  11775796 ataattaatgacggtgggacccacttagtggtaggatccaccatctattttttgtgtctatctc 11775859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 285
Target Start/End: Complemental strand, 27428949 - 27428890
Alignment:
Q  226 ttaatgatggtgggactcacttaatagtaggatccattatctactttttgtgtctatctc 285  Q
    ||||||||||||| ||||||||||| ||||||| ||  ||||| ||||||||||||||||    
T  27428949 ttaatgatggtggaactcacttaatggtaggattcaccatctattttttgtgtctatctc 27428890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 261
Target Start/End: Complemental strand, 28142847 - 28142808
Alignment:
Q  222 ataattaatgatggtgggactcacttaatagtaggatcca 261  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  28142847 ataattaatgatggtgggactcacttaatggtaggatcca 28142808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 285
Target Start/End: Complemental strand, 35660681 - 35660618
Alignment:
Q  222 ataattaatgatggtgggactcacttaatagtaggatccattatctactttttgtgtctatctc 285  Q
    |||||||||||||||||||| |||||| | |||||| |||  ||||| ||||||||||||||||    
T  35660681 ataattaatgatggtgggacccacttagtggtaggacccaccatctattttttgtgtctatctc 35660618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 216 - 285
Target Start/End: Original strand, 3057413 - 3057482
Alignment:
Q  216 tataaaataattaatgatggtgggactcacttaatagtaggatccattatctactttttgtgtctatctc 285  Q
    ||||||||||||||||||| ||| ||||||||  | ||||||||||| ||||  ||||| ||||||||||    
T  3057413 tataaaataattaatgatgatggaactcactttgtggtaggatccatcatcttttttttttgtctatctc 3057482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 216 - 285
Target Start/End: Original strand, 18653358 - 18653427
Alignment:
Q  216 tataaaataattaatgatggtgggactcacttaatagtaggatccattatctactttttgtgtctatctc 285  Q
    ||||||||||||| | |||||| |||||||||||| |||| |  || |||||| ||||||||||||||||    
T  18653358 tataaaataattattaatggtgagactcacttaatggtagaactcactatctattttttgtgtctatctc 18653427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 285
Target Start/End: Complemental strand, 3057226 - 3057163
Alignment:
Q  222 ataattaatgatggtgggactcacttaatagtaggatccattatctactttttgtgtctatctc 285  Q
    ||||||||||||  || |||||||||||| ||||||||||  ||||| ||||||||| ||||||    
T  3057226 ataattaatgattatgtgactcacttaatggtaggatccaccatctattttttgtgtttatctc 3057163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 285
Target Start/End: Original strand, 14349806 - 14349869
Alignment:
Q  222 ataattaatgatggtgggactcacttaatagtaggatccattatctactttttgtgtctatctc 285  Q
    |||||||||||||||||||| |||||| | |||||| |||  ||||| ||||||||||| ||||    
T  14349806 ataattaatgatggtgggacccacttagtggtaggacccaccatctattttttgtgtctgtctc 14349869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 285
Target Start/End: Complemental strand, 18625493 - 18625430
Alignment:
Q  222 ataattaatgatggtgggactcacttaatagtaggatccattatctactttttgtgtctatctc 285  Q
    |||||||||||||||||||| |||||| | |||||| |||  ||||| ||||||||||| ||||    
T  18625493 ataattaatgatggtgggacccacttagtggtaggacccaccatctattttttgtgtctttctc 18625430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 285
Target Start/End: Complemental strand, 32129689 - 32129626
Alignment:
Q  222 ataattaatgatggtgggactcacttaatagtaggatccattatctactttttgtgtctatctc 285  Q
    |||||||||||||||||||| |||||| | |||||| |||  ||||| |||| |||||||||||    
T  32129689 ataattaatgatggtgggacccacttagtggtaggacccaccatctatttttggtgtctatctc 32129626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 285
Target Start/End: Original strand, 34827195 - 34827258
Alignment:
Q  222 ataattaatgatggtgggactcacttaatagtaggatccattatctactttttgtgtctatctc 285  Q
    |||||||| ||||||||||| |||||| | ||||||||||  ||||| ||||| ||||||||||    
T  34827195 ataattaaagatggtgggacccacttagtggtaggatccaccatctattttttttgtctatctc 34827258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 285
Target Start/End: Original strand, 37266734 - 37266797
Alignment:
Q  222 ataattaatgatggtgggactcacttaatagtaggatccattatctactttttgtgtctatctc 285  Q
    |||||||||||||||||||| |||||| | ||| || |||  ||||| ||||||||||||||||    
T  37266734 ataattaatgatggtgggacccacttagtggtatgacccaccatctattttttgtgtctatctc 37266797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 284
Target Start/End: Complemental strand, 40753234 - 40753172
Alignment:
Q  222 ataattaatgatggtgggactcacttaatagtaggatccattatctactttttgtgtctatct 284  Q
    |||||||||||||||||||| |||||| | |||||| |||  || || |||||||||||||||    
T  40753234 ataattaatgatggtgggacccacttagtggtaggacccaccatatattttttgtgtctatct 40753172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 285
Target Start/End: Original strand, 43309108 - 43309174
Alignment:
Q  219 aaaataattaatgatggtgggactcacttaatagtaggatccattatctactttttgtgtctatctc 285  Q
    |||| ||||||||||||||| || || ||||| ||| |||||| |||||| ||||| ||||||||||    
T  43309108 aaaaaaattaatgatggtggaacccatttaatggtaagatccactatctattttttatgtctatctc 43309174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 215 - 285
Target Start/End: Original strand, 1871273 - 1871343
Alignment:
Q  215 atataaaataattaatgatggtgggactcacttaatagtaggatccattatctactttttgtgtctatctc 285  Q
    |||||||||||||||||||| |||||| |||||| |||||||||||| ||||||  |||| ||||||||||    
T  1871273 atataaaataattaatgatgatgggacccacttagtagtaggatccactatctatattttttgtctatctc 1871343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 222 - 285
Target Start/End: Original strand, 34778424 - 34778487
Alignment:
Q  222 ataattaatgatggtgggactcacttaatagtaggatccattatctactttttgtgtctatctc 285  Q
    |||||||||||||||||||| |||||| | ||||||||||  ||||| ||||||||||||||||    
T  34778424 ataattaatgatggtgggacccacttagtggtaggatccaccatctattttttgtgtctatctc 34778487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 285
Target Start/End: Complemental strand, 19901990 - 19901927
Alignment:
Q  222 ataattaatgatggtgggactcacttaatagtaggatccattatctactttttgtgtctatctc 285  Q
    |||||||||||||||||||| |||||| | |||||| |||  ||||| ||||||||||||||||    
T  19901990 ataattaatgatggtgggacccacttagtggtaggacccaccatctattttttgtgtctatctc 19901927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 285
Target Start/End: Original strand, 23474115 - 23474177
Alignment:
Q  223 taattaatgatggtgggactcacttaatagtaggatccattatctactttttgtgtctatctc 285  Q
    |||||||||||||||||| ||||| |||||||||| |||  ||||| ||| ||||||||||||    
T  23474115 taattaatgatggtgggattcactcaatagtaggacccaccatctattttatgtgtctatctc 23474177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 285
Target Start/End: Complemental strand, 37002326 - 37002260
Alignment:
Q  219 aaaataattaatgatggtgggactcacttaatagtaggatccattatctactttttgtgtctatctc 285  Q
    ||||||||||||||||||||||| |||||| || |||||||||  |  || ||||||||||||||||    
T  37002326 aaaataattaatgatggtgggacccacttagtaataggatccaccacttattttttgtgtctatctc 37002260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 219 - 284
Target Start/End: Complemental strand, 40215520 - 40215455
Alignment:
Q  219 aaaataattaatgatggtgggactcacttaatagtaggatccattatctactttttgtgtctatct 284  Q
    |||| ||||||||||||||||||||||| | | ||||||||||| ||||| ||||| ||| |||||    
T  40215520 aaaaaaattaatgatggtgggactcactaagtggtaggatccataatctaatttttatgtgtatct 40215455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 285
Target Start/End: Complemental strand, 5416537 - 5416475
Alignment:
Q  222 ataattaatgatggtgggactcacttaatagtaggatccattatctactttttgtgtctatctc 285  Q
    |||||||||||||||||||| |||||| | |||||| |||  ||||| ||||||||||||||||    
T  5416537 ataattaatgatggtgggacccacttagtggtaggacccacaatcta-tttttgtgtctatctc 5416475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 285
Target Start/End: Complemental strand, 5763234 - 5763171
Alignment:
Q  222 ataattaatgatggtgggactcacttaatagtaggatccattatctactttttgtgtctatctc 285  Q
    |||||||||||||||||||| |||||| | |||||| |||  ||||| ||||||| ||||||||    
T  5763234 ataattaatgatggtgggacccacttagtggtaggacccaccatctattttttgtttctatctc 5763171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 219 - 270
Target Start/End: Complemental strand, 31862295 - 31862244
Alignment:
Q  219 aaaataattaatgatggtgggactcacttaatagtaggatccattatctact 270  Q
    ||||||||||||||||||||||| |||||| | ||||||||||  |||||||    
T  31862295 aaaataattaatgatggtgggacccacttagtggtaggatccaccatctact 31862244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 285
Target Start/End: Complemental strand, 33262624 - 33262561
Alignment:
Q  222 ataattaatgatggtgggactcacttaatagtaggatccattatctactttttgtgtctatctc 285  Q
    ||||||||||||||||||||  | ||| | ||||||||||  ||||| ||||||||||||||||    
T  33262624 ataattaatgatggtgggacctatttagtggtaggatccaccatctattttttgtgtctatctc 33262561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 285
Target Start/End: Original strand, 56558282 - 56558345
Alignment:
Q  222 ataattaatgatggtgggactcacttaatagtaggatccattatctactttttgtgtctatctc 285  Q
    |||||||||||||||||||| |||||| |  ||||| |||  ||||| ||||||||||||||||    
T  56558282 ataattaatgatggtgggacccacttagtgataggacccaccatctattttttgtgtctatctc 56558345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 261
Target Start/End: Complemental strand, 52030769 - 52030727
Alignment:
Q  219 aaaataattaatgatggtgggactcacttaatagtaggatcca 261  Q
    ||||||||||||||||||||||| |||||| | ||||||||||    
T  52030769 aaaataattaatgatggtgggacccacttatttgtaggatcca 52030727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 285
Target Start/End: Complemental strand, 56269151 - 56269085
Alignment:
Q  219 aaaataattaatgatggtgggactcacttaatagtaggatccattatctactttttgtgtctatctc 285  Q
    ||||||||||||||||||||||| |||||| | |||||| |||  |  || ||||||||||||||||    
T  56269151 aaaataattaatgatggtgggacccacttagtggtaggacccaccacttattttttgtgtctatctc 56269085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 285
Target Start/End: Complemental strand, 56453895 - 56453829
Alignment:
Q  219 aaaataattaatgatggtgggactcacttaatagtaggatccattatctactttttgtgtctatctc 285  Q
    |||||||| |||||||||||||| ||||||||  ||||| |||  | ||| ||||||||||||||||    
T  56453895 aaaataatgaatgatggtgggacccacttaatgataggacccaccacctattttttgtgtctatctc 56453829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 222 - 285
Target Start/End: Original strand, 7150 - 7213
Alignment:
Q  222 ataattaatgatggtgggactcacttaatagtaggatccattatctactttttgtgtctatctc 285  Q
    ||||||||||||||||| || ||||||||||||||| |||  ||||| ||||||||||||||||    
T  7150 ataattaatgatggtggaacccacttaatagtaggacccaccatctattttttgtgtctatctc 7213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 222 - 285
Target Start/End: Original strand, 32915959 - 32916022
Alignment:
Q  222 ataattaatgatggtgggactcacttaatagtaggatccattatctactttttgtgtctatctc 285  Q
    |||||| |||||||||||||||||||||| |||||| ||| ||| || ||||||||||||||||    
T  32915959 ataattcatgatggtgggactcacttaatggtaggacccactatttattttttgtgtctatctc 32916022  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 285
Target Start/End: Original strand, 4888470 - 4888533
Alignment:
Q  222 ataattaatgatggtgggactcacttaatagtaggatccattatctactttttgtgtctatctc 285  Q
    ||||||||||||||||||||  ||||| | |||||| ||| |||||| ||||||||||||||||    
T  4888470 ataattaatgatggtgggacctacttagtggtaggacccactatctattttttgtgtctatctc 4888533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 285
Target Start/End: Complemental strand, 25084800 - 25084737
Alignment:
Q  222 ataattaatgatggtgggactcacttaatagtaggatccattatctactttttgtgtctatctc 285  Q
    |||||||||||||||||||| |||||| | |||||| |||  ||||| ||||||||||||||||    
T  25084800 ataattaatgatggtgggacccacttagtggtaggacccaccatctattttttgtgtctatctc 25084737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 219 - 284
Target Start/End: Complemental strand, 40023331 - 40023266
Alignment:
Q  219 aaaataattaatgatggtgggactcacttaatagtaggatccattatctactttttgtgtctatct 284  Q
    ||||||||||||| ||||||||| |||||||| ||| ||||||||| ||| ||| | |||||||||    
T  40023331 aaaataattaatggtggtgggacccacttaatggtaagatccattaactattttatatgtctatct 40023266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 285
Target Start/End: Original strand, 12139329 - 12139393
Alignment:
Q  222 ataattaatgatggtgggactc-acttaatagtaggatccattatctactttttgtgtctatctc 285  Q
    |||||||||||||||||||| | ||||||| |||||| |||  ||||| ||||||||||||||||    
T  12139329 ataattaatgatggtgggaccccacttaatggtaggacccaccatctattttttgtgtctatctc 12139393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 285
Target Start/End: Complemental strand, 9559126 - 9559063
Alignment:
Q  222 ataattaatgatggtgggactcacttaatagtaggatccattatctactttttgtgtctatctc 285  Q
    |||||||||||||||||||| |||||| | |||||| |||  ||||| ||||||| ||||||||    
T  9559126 ataattaatgatggtgggacccacttagtggtaggacccaccatctattttttgtatctatctc 9559063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 285
Target Start/End: Original strand, 16366521 - 16366584
Alignment:
Q  222 ataattaatgatggtgggactcacttaatagtaggatccattatctactttttgtgtctatctc 285  Q
    |||||||||||||||||||| |||||| | ||||||||||  ||||| || || ||||||||||    
T  16366521 ataattaatgatggtgggacacacttagtggtaggatccaccatctatttcttatgtctatctc 16366584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 285
Target Start/End: Original strand, 21151155 - 21151218
Alignment:
Q  222 ataattaatgatggtgggactcacttaatagtaggatccattatctactttttgtgtctatctc 285  Q
    |||||||||||||||||||| |||||| | |||||||||   ||||| || |||||||||||||    
T  21151155 ataattaatgatggtgggacccacttagtggtaggatcctccatctatttcttgtgtctatctc 21151218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 285
Target Start/End: Complemental strand, 45260499 - 45260436
Alignment:
Q  222 ataattaatgatggtgggactcacttaatagtaggatccattatctactttttgtgtctatctc 285  Q
    ||||||||||||| |||||  |||||| | ||||||||||  ||||| ||||||||||||||||    
T  45260499 ataattaatgatgatgggatccacttagtggtaggatccacaatctattttttgtgtctatctc 45260436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 285
Target Start/End: Original strand, 989125 - 989195
Alignment:
Q  215 atataaaataattaatgatggtgggactcacttaatagtaggatccattatctactttttgtgtctatctc 285  Q
    |||||||||||||||| ||||| ||||  ||||| | |||||| ||| ||| || ||||||||||||||||    
T  989125 atataaaataattaattatggttggacctacttagtggtaggacccactatatattttttgtgtctatctc 989195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 285
Target Start/End: Complemental strand, 47799975 - 47799909
Alignment:
Q  219 aaaataattaatgatggtgggactcacttaatagtaggatccattatctactttttgtgtctatctc 285  Q
    ||||||||||||||||||||||| |||||| |  ||||| |||| |  || ||||||||||||||||    
T  47799975 aaaataattaatgatggtgggacccacttagtgataggacccatcacttattttttgtgtctatctc 47799909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 282
Target Start/End: Original strand, 18198259 - 18198319
Alignment:
Q  222 ataattaatgatggtgggactcacttaatagtaggatccattatctactttttgtgtctat 282  Q
    ||||||||||||||||||||||||||| | | || | |||  ||||| |||||||||||||    
T  18198259 ataattaatgatggtgggactcacttagtggcagaacccaccatctattttttgtgtctat 18198319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 219 - 285
Target Start/End: Complemental strand, 2800686 - 2800620
Alignment:
Q  219 aaaataattaatgatggtgggactcacttaatagtaggatccattatctactttttgtgtctatctc 285  Q
    |||||||| |||||||||||||| |||||||| ||| |||||| |||||| ||| ||||||||||||    
T  2800686 aaaataatcaatgatggtgggacccacttaatggtatgatccactatctattttatgtgtctatctc 2800620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 285
Target Start/End: Original strand, 4804451 - 4804514
Alignment:
Q  222 ataattaatgatggtgggactcacttaatagtaggatccattatctactttttgtgtctatctc 285  Q
    |||||||||||||||||||| |||||| | |||||| |||  ||||| ||||||||||||||||    
T  4804451 ataattaatgatggtgggacccacttagtggtaggacccaccatctattttttgtgtctatctc 4804514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 285
Target Start/End: Original strand, 7162087 - 7162150
Alignment:
Q  222 ataattaatgatggtgggactcacttaatagtaggatccattatctactttttgtgtctatctc 285  Q
    |||||||||||||||||||| |||||| |||||||| |||  ||||| || |||||||||||||    
T  7162087 ataattaatgatggtgggacccacttagtagtaggacccaccatctatttcttgtgtctatctc 7162150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 285
Target Start/End: Original strand, 27826541 - 27826604
Alignment:
Q  222 ataattaatgatggtgggactcacttaatagtaggatccattatctactttttgtgtctatctc 285  Q
    |||||||||||||||||||| |||||| | |||||| |||  ||||| ||||||||||||||||    
T  27826541 ataattaatgatggtgggacccacttagtggtaggacccaccatctattttttgtgtctatctc 27826604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 285
Target Start/End: Original strand, 12734410 - 12734475
Alignment:
Q  219 aaaataattaatgatggtgggactcacttaatagtaggatccattatctactttttgtgtctatctc 285  Q
    |||||||||||||||||||||| ||||||| |  |||| ||||||||||| ||||||| ||||||||    
T  12734410 aaaataattaatgatggtgggattcacttagtgatagg-tccattatctagtttttgtttctatctc 12734475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 276
Target Start/End: Original strand, 29698166 - 29698220
Alignment:
Q  222 ataattaatgatggtgggactcacttaatagtaggatccattatctactttttgt 276  Q
    |||||||||||||||||||| |||||||| ||||||||||  ||||| |||||||    
T  29698166 ataattaatgatggtgggacccacttaatggtaggatccaccatctattttttgt 29698220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 215 - 260
Target Start/End: Original strand, 2720369 - 2720414
Alignment:
Q  215 atataaaataattaatgatggtgggactcacttaatagtaggatcc 260  Q
    ||||||||||||||||||||||||||| |||||| | |||||||||    
T  2720369 atataaaataattaatgatggtgggacccacttagtggtaggatcc 2720414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 282
Target Start/End: Complemental strand, 21159441 - 21159381
Alignment:
Q  222 ataattaatgatggtgggactcacttaatagtaggatccattatctactttttgtgtctat 282  Q
    |||||||||||||||||||| |||||| | |||||| |||  ||||| |||||||||||||    
T  21159441 ataattaatgatggtgggacccacttagtggtaggacccaccatctattttttgtgtctat 21159381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 285
Target Start/End: Complemental strand, 17828639 - 17828577
Alignment:
Q  223 taattaatgatggtgggactcacttaatagtaggatccattatctactttttgtgtctatctc 285  Q
    |||||| ||||| |||||  ||||||||||||| ||||| |||||| ||| ||||||||||||    
T  17828639 taattattgatgatgggatccacttaatagtagaatccactatctattttatgtgtctatctc 17828577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 268
Target Start/End: Complemental strand, 5047460 - 5047407
Alignment:
Q  215 atataaaataattaatgatggtgggactcacttaatagtaggatccattatcta 268  Q
    ||||||||||||||||||||||||||| ||| || | |||||||||||||||||    
T  5047460 atataaaataattaatgatggtgggacccacatagtggtaggatccattatcta 5047407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 284
Target Start/End: Complemental strand, 32887855 - 32887790
Alignment:
Q  219 aaaataattaatgatggtgggactcacttaatagtaggatccattatctactttttgtgtctatct 284  Q
    ||||||||||||||||||||||| || ||||| |||||||||| ||| || ||| |||||||||||    
T  32887855 aaaataattaatgatggtgggacccatttaatggtaggatccactatttattttatgtgtctatct 32887790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 285
Target Start/End: Original strand, 26372252 - 26372318
Alignment:
Q  219 aaaataattaatgatggtgggactcacttaatagtaggatccattatctactttttgtgtctatctc 285  Q
    ||||||||||||| ||||||||| |||||||| |||||||| ||| |||| |||  |||||||||||    
T  26372252 aaaataattaatggtggtgggacccacttaatggtaggatctattgtctattttacgtgtctatctc 26372318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 223 - 268
Target Start/End: Original strand, 32618805 - 32618850
Alignment:
Q  223 taattaatgatggtgggactcacttaatagtaggatccattatcta 268  Q
    |||||||||||||||||||  |||||||||||||||||| ||||||    
T  32618805 taattaatgatggtgggacctacttaatagtaggatccactatcta 32618850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 287
Target Start/End: Complemental strand, 24413357 - 24413289
Alignment:
Q  219 aaaataattaatgatggtgggactcacttaatagtaggatccattatctactttttgtgtctatctcat 287  Q
    ||||||||||||||||||||||| || |||||  ||||| |||  ||| | ||||||||||||||||||    
T  24413357 aaaataattaatgatggtgggacccatttaatgataggacccaccatccattttttgtgtctatctcat 24413289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 274
Target Start/End: Complemental strand, 49944045 - 49943989
Alignment:
Q  218 taaaataattaatgatggtgggactcacttaatagtaggatccattatctacttttt 274  Q
    ||||||||||||||||||| ||||||| |||||| ||||| |||| ||||| |||||    
T  49944045 taaaataattaatgatggtaggactcatttaataataggacccatcatctatttttt 49943989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 285
Target Start/End: Original strand, 12151770 - 12151833
Alignment:
Q  222 ataattaatgatggtgggactcacttaatagtaggatccattatctactttttgtgtctatctc 285  Q
    |||||||||||||||||||| |||||| | |||||| |||  ||||| ||||||||||| ||||    
T  12151770 ataattaatgatggtgggacccacttagtggtaggacccacaatctattttttgtgtctttctc 12151833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 280
Target Start/End: Complemental strand, 12380982 - 12380924
Alignment:
Q  222 ataattaatgatggtgggactcacttaatagtaggatccattatctactttttgtgtct 280  Q
    ||||||||||||||||||||||||||| | |||| | |||  ||||| |||||||||||    
T  12380982 ataattaatgatggtgggactcacttagtggtagaacccaccatctattttttgtgtct 12380924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 280
Target Start/End: Complemental strand, 12385049 - 12384991
Alignment:
Q  222 ataattaatgatggtgggactcacttaatagtaggatccattatctactttttgtgtct 280  Q
    ||||||||||||||||||||||||||| | |||| | |||  ||||| |||||||||||    
T  12385049 ataattaatgatggtgggactcacttagtggtagaacccaccatctattttttgtgtct 12384991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 285
Target Start/End: Original strand, 39426210 - 39426276
Alignment:
Q  219 aaaataattaatgatggtgggactcacttaatagtaggatccattatctactttttgtgtctatctc 285  Q
    ||||||||||||||| ||||||| || ||| | |||||| ||| |||||| ||| ||||||||||||    
T  39426210 aaaataattaatgatagtgggacccaattagtggtaggacccactatctattttatgtgtctatctc 39426276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 285
Target Start/End: Complemental strand, 22514 - 22451
Alignment:
Q  222 ataattaatgatggtgggactcacttaatagtaggatccattatctactttttgtgtctatctc 285  Q
    ||||||||| || |||| ||||||||| | |||||||||| |||||| ||||||||||||||||    
T  22514 ataattaattattgtggaactcacttagtggtaggatccactatctattttttgtgtctatctc 22451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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