View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20803_low_42 (Length: 293)
Name: NF20803_low_42
Description: NF20803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20803_low_42 |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 22 - 259
Target Start/End: Original strand, 40509227 - 40509464
Alignment:
| Q |
22 |
ccatttacccataaagtatagtataagattgtaggaagacctaccaatcaatatcaccatcaagcatatgaagcagcaacaactacttgaattaatacta |
121 |
Q |
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| T |
40509227 |
ccatttacccataaagtatagtataagattgtaggaagacctaccaatcaatatcaccatcaagcatatgaagcagcaacaactacttgaattaatacta |
40509326 |
T |
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| Q |
122 |
ttgctgttacacaatttgacttcaccggcacatgaaaaaattaagagagaagtgcaacataaaaacaatggctgaaatcatataacaagtcatattacaa |
221 |
Q |
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| T |
40509327 |
ttgctgttacacaatttgacttcaccggcacatgaaaaaattaagagagaagtgcaacataaaaacaatggctgaaatcatataacaagtcatattacaa |
40509426 |
T |
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| Q |
222 |
aaaatatgtctaattatcaaacatataactaaatgata |
259 |
Q |
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| T |
40509427 |
aaaatatgtttaattatcaaacatataactaaatgata |
40509464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 145
Target Start/End: Original strand, 40514635 - 40514705
Alignment:
| Q |
78 |
ccatcaagcatatgaagcagcaacaactact---tgaattaatactattgctgttacacaatttgacttca |
145 |
Q |
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| T |
40514635 |
ccatcaaacatattgagcagcaacaactactaattgaattaatattattgctgttacataatttcacttca |
40514705 |
T |
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