View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20803_low_45 (Length: 287)
Name: NF20803_low_45
Description: NF20803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20803_low_45 |
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Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 10 - 272
Target Start/End: Original strand, 30663778 - 30664039
Alignment:
| Q |
10 |
aagaaaatctggtcctatcggcacttcaatatctttctcacatctcttcagacctgaattttctgcaaacatatcattgccgtaacaacggaaagaagga |
109 |
Q |
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| T |
30663778 |
aagaaaatctggtcctatcggcacttcaatatctttctcacatctcttcagacctatcattgccgtaa-catatcattgccgtaacaacggaaagaagga |
30663876 |
T |
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| Q |
110 |
ttgtgagatccacacagatattttttaggtaaatattgagtgccattgtaagtgtagttatataaaatgtctatgatgttgtcgaaactgaaacatagtt |
209 |
Q |
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| T |
30663877 |
ttgtgagatccacacagatattttttaggtaaatattgagtgccattgtaagtgtagttatataaaatgtctatgatgttgtcgaaactgaaacatagtt |
30663976 |
T |
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| Q |
210 |
ggagacnnnnnnngtatcatcaaattgaggagaacaaagattttgatcaaggtctgttctttt |
272 |
Q |
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| T |
30663977 |
ggagacaaaaaaagtatcatcaaattgaggagaacaaagattttgatcaaggtctgttctttt |
30664039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 223 - 272
Target Start/End: Complemental strand, 15493419 - 15493370
Alignment:
| Q |
223 |
gtatcatcaaattgaggagaacaaagattttgatcaaggtctgttctttt |
272 |
Q |
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| T |
15493419 |
gtatcatgaaattgaggagaacatagattttgatcaaggtctgttctttt |
15493370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 223 - 272
Target Start/End: Complemental strand, 31012640 - 31012591
Alignment:
| Q |
223 |
gtatcatcaaattgaggagaacaaagattttgatcaaggtctgttctttt |
272 |
Q |
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| T |
31012640 |
gtatcattatattgaggagaacaaagattttgatcaaggtctgttctttt |
31012591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 233 - 273
Target Start/End: Complemental strand, 30958822 - 30958782
Alignment:
| Q |
233 |
attgaggagaacaaagattttgatcaaggtctgttcttttt |
273 |
Q |
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| T |
30958822 |
attgaggagaacaaagattttgatcaaggtctgttcttttt |
30958782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 104 - 162
Target Start/End: Complemental strand, 31222000 - 31221942
Alignment:
| Q |
104 |
gaaggattgtgagatccacacagatattttttaggtaaatattgagtgccattgtaagt |
162 |
Q |
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| T |
31222000 |
gaaggattgtgagatccacacagagattttttaagtaaatcttgagagacattgtaagt |
31221942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 223 - 272
Target Start/End: Original strand, 15523181 - 15523230
Alignment:
| Q |
223 |
gtatcatcaaattgaggagaacaaagattttgatcaaggtctgttctttt |
272 |
Q |
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||||||| ||||| ||||||||| |||||||||||||||||||||||||| |
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| T |
15523181 |
gtatcattaaatttaggagaacatagattttgatcaaggtctgttctttt |
15523230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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