View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20803_low_47 (Length: 271)

Name: NF20803_low_47
Description: NF20803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20803_low_47
NF20803_low_47
[»] chr1 (1 HSPs)
chr1 (13-254)||(7554735-7554977)
[»] chr6 (3 HSPs)
chr6 (146-254)||(9411801-9411909)
chr6 (153-209)||(6588601-6588657)
chr6 (64-100)||(9411716-9411752)
[»] chr4 (6 HSPs)
chr4 (148-249)||(21833586-21833687)
chr4 (142-249)||(8186638-8186745)
chr4 (148-186)||(1601179-1601217)
chr4 (145-178)||(7225501-7225534)
chr4 (146-178)||(8183638-8183670)
chr4 (148-209)||(7308230-7308291)
[»] chr3 (2 HSPs)
chr3 (143-254)||(513952-514063)
chr3 (148-254)||(51763673-51763779)


Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 13 - 254
Target Start/End: Original strand, 7554735 - 7554977
Alignment:
Q  13 aaaatccatcaaagaataagacttctccatattattttttgtgaaatatgtgtattccagtttaatctcactaagtgaaggatagttcttaatgagtgca 112  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  7554735 aaaatccatcaaagaataagaattctccatattattttttgtgaaatatgtgtattccagtttaatctcactaagtgaaggatagttcttaacgagtgca 7554834  T
Q  113 aacagcgttgcgaagtttcttgattcgtgatcggtaaaggataaagacctcaatgttggtctctcatggagagctg-aaaaaatgcctgctttggttatg 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||    
T  7554835 aacagcgttgcgaagtttcttgattcgtgatcggtaaaggataaagacctcaatgttggtctctcatggagagctgaaaaaaatgccagctttggttatg 7554934  T
Q  212 ccatcacactcaaacatgataacctcttggagaagcttgcagt 254  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  7554935 ccatcacactcaaacatgataacctcttggagaagcttgcagt 7554977  T

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Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 146 - 254
Target Start/End: Original strand, 9411801 - 9411909
Alignment:
Q  146 gtaaaggataaagacctcaatgttggtctctcatggagagctgaaaaaatgcctgctttggttatgccatcacactcaaacatgataacctcttggagaa 245  Q
    |||||||| ||||||||||| ||||||||||||  |||||| |||| ||||||  |||||||||||| |  |||   |||||||||||||||||||||||    
T  9411801 gtaaaggacaaagacctcaaggttggtctctcacagagagcagaaacaatgccaactttggttatgctacgacagcgaaacatgataacctcttggagaa 9411900  T
Q  246 gcttgcagt 254  Q
    |||| ||||    
T  9411901 gcttacagt 9411909  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 209
Target Start/End: Complemental strand, 6588657 - 6588601
Alignment:
Q  153 ataaagacctcaatgttggtctctcatggagagctgaaaaaatgcctgctttggtta 209  Q
    |||||||| ||||| ||||||||||| ||||||| |||  ||||||||| |||||||    
T  6588657 ataaagacgtcaattttggtctctcacggagagcagaagcaatgcctgcattggtta 6588601  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 100
Target Start/End: Original strand, 9411716 - 9411752
Alignment:
Q  64 gtattccagtttaatctcactaagtgaaggatagttc 100  Q
    |||||||| |||||||||||||||| |||||||||||    
T  9411716 gtattccattttaatctcactaagtaaaggatagttc 9411752  T

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Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 148 - 249
Target Start/End: Complemental strand, 21833687 - 21833586
Alignment:
Q  148 aaaggataaagacctcaatgttggtctctcatggagagctgaaaaaatgcctgctttggttatgccatcacactcaaacatgataacctcttggagaagc 247  Q
    |||||||||||| |||||||||||||||||| |||||||||||  ||||||| || || ||||   |||||| ||||||||||| |||||||  ||||||    
T  21833687 aaaggataaagaactcaatgttggtctctcacggagagctgaagcaatgccttctctgcttatttgatcacaatcaaacatgatgacctcttcaagaagc 21833588  T
Q  248 tt 249  Q
    ||    
T  21833587 tt 21833586  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 249
Target Start/End: Complemental strand, 8186745 - 8186638
Alignment:
Q  142 atcggtaaaggataaagacctcaatgttggtctctcatggagagctgaaaaaatgcctgctttggttatgccatcacactcaaacatgataacctcttgg 241  Q
    |||||||||||||||||||||||| |||||||||||    || || |||  |||||||||||||||||    |  ||||| ||||||||||||||||| |    
T  8186745 atcggtaaaggataaagacctcaacgttggtctctcccatagggcagaagcaatgcctgctttggttaactgagaacacttaaacatgataacctcttcg 8186646  T
Q  242 agaagctt 249  Q
    ||| ||||    
T  8186645 agatgctt 8186638  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 148 - 186
Target Start/End: Original strand, 1601179 - 1601217
Alignment:
Q  148 aaaggataaagacctcaatgttggtctctcatggagagc 186  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  1601179 aaaggataaagacctcaatgttggtctctcacggagagc 1601217  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 145 - 178
Target Start/End: Complemental strand, 7225534 - 7225501
Alignment:
Q  145 ggtaaaggataaagacctcaatgttggtctctca 178  Q
    ||||||||||||||||||||||||||||||||||    
T  7225534 ggtaaaggataaagacctcaatgttggtctctca 7225501  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 178
Target Start/End: Complemental strand, 8183670 - 8183638
Alignment:
Q  146 gtaaaggataaagacctcaatgttggtctctca 178  Q
    |||||||||||||||||||||||||||||||||    
T  8183670 gtaaaggataaagacctcaatgttggtctctca 8183638  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 148 - 209
Target Start/End: Original strand, 7308230 - 7308291
Alignment:
Q  148 aaaggataaagacctcaatgttggtctctcatggagagctgaaaaaatgcctgctttggtta 209  Q
    |||||||||||| | |||||||||||||||||| ||||| | |  ||||||||| |||||||    
T  7308230 aaaggataaagagcgcaatgttggtctctcatgtagagcagtagcaatgcctgcgttggtta 7308291  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 143 - 254
Target Start/End: Complemental strand, 514063 - 513952
Alignment:
Q  143 tcggtaaaggataaagacctcaatgttggtctctcatggagagctgaaaaaatgcctgctttggttatgccatcacactcaaacatgataacctcttgga 242  Q
    |||| |||||||| |||  ||||||||||||||||| ||||||| |||  ||| |||  ||||||||||| ||| || | ||| |||||||||||||| |    
T  514063 tcggaaaaggatatagaggtcaatgttggtctctcacggagagcagaagcaataccttgtttggttatgcgatcgcaattaaagatgataacctcttgaa 513964  T
Q  243 gaagcttgcagt 254  Q
    ||||||| ||||    
T  513963 gaagcttacagt 513952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 148 - 254
Target Start/End: Complemental strand, 51763779 - 51763673
Alignment:
Q  148 aaaggataaagacctcaatgttggtctctcatggagagctgaaaaaatgcctgctttggttatgccatcacactcaaacatgataacctcttggagaagc 247  Q
    ||||||||||||| ||||||||||||| ||| ||||||| |||   |  ||||| ||||||||   |||||| ||||||||||| || ||||||||||||    
T  51763779 aaaggataaagacgtcaatgttggtctttcacggagagcagaagtgactcctgcattggttatttgatcacagtcaaacatgatgacatcttggagaagc 51763680  T
Q  248 ttgcagt 254  Q
    || ||||    
T  51763679 ttacagt 51763673  T

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