View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20803_low_48 (Length: 271)

Name: NF20803_low_48
Description: NF20803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20803_low_48
NF20803_low_48
[»] chr1 (1 HSPs)
chr1 (9-218)||(395852-396061)
[»] chr6 (1 HSPs)
chr6 (200-229)||(27984246-27984275)
[»] chr7 (3 HSPs)
chr7 (202-234)||(19302484-19302516)
chr7 (202-234)||(34036034-34036066)
chr7 (200-228)||(35267472-35267500)
[»] chr5 (1 HSPs)
chr5 (202-234)||(28578962-28578994)
[»] chr4 (3 HSPs)
chr4 (202-234)||(1133045-1133077)
chr4 (200-228)||(23983902-23983930)
chr4 (200-228)||(23990597-23990625)
[»] chr2 (1 HSPs)
chr2 (202-234)||(44458077-44458109)


Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 9 - 218
Target Start/End: Original strand, 395852 - 396061
Alignment:
Q  9 agcagagatacgagttatgaagttggtggtggatttccacttaacgaacttcttaaccgaaatgaaaactcagaggaggatacttctgctcaacgtgaag 108  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  395852 agcagcgatacgagttatgaagttggtggtggatttccacttaacgaacttcttaaccgaaataaaaactcagaggaggatacttctgctcaacgtgaag 395951  T
Q  109 cacttcttaaaggtggtgatcaagttatctccgttcttcaagaaatgattacccttgtaagttctttcttaatttcaccaatgagttattttatttgaat 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  395952 cacttcttaaaggtggtgatcaagttatctccgttcttcaagaaatgattacccttgtaagttctttcttattttcaccaatgagttattttatttgaat 396051  T
Q  209 tgacttattt 218  Q
    ||||||||||    
T  396052 tgacttattt 396061  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 229
Target Start/End: Complemental strand, 27984275 - 27984246
Alignment:
Q  200 tatttgaattgacttatttgagcttatctg 229  Q
    ||||||||||||||||||||||||||||||    
T  27984275 tatttgaattgacttatttgagcttatctg 27984246  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 234
Target Start/End: Original strand, 19302484 - 19302516
Alignment:
Q  202 tttgaattgacttatttgagcttatctgctgac 234  Q
    ||||||||||||||||||||||||||| |||||    
T  19302484 tttgaattgacttatttgagcttatctactgac 19302516  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 234
Target Start/End: Complemental strand, 34036066 - 34036034
Alignment:
Q  202 tttgaattgacttatttgagcttatctgctgac 234  Q
    ||||||||||||||||||||||||||| |||||    
T  34036066 tttgaattgacttatttgagcttatctactgac 34036034  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 228
Target Start/End: Complemental strand, 35267500 - 35267472
Alignment:
Q  200 tatttgaattgacttatttgagcttatct 228  Q
    |||||||||||||||||||||||||||||    
T  35267500 tatttgaattgacttatttgagcttatct 35267472  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 234
Target Start/End: Complemental strand, 28578994 - 28578962
Alignment:
Q  202 tttgaattgacttatttgagcttatctgctgac 234  Q
    ||||||||||||||||||||||||||| |||||    
T  28578994 tttgaattgacttatttgagcttatctactgac 28578962  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 234
Target Start/End: Complemental strand, 1133077 - 1133045
Alignment:
Q  202 tttgaattgacttatttgagcttatctgctgac 234  Q
    ||||||||||||||||||||||||||| |||||    
T  1133077 tttgaattgacttatttgagcttatctactgac 1133045  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 228
Target Start/End: Original strand, 23983902 - 23983930
Alignment:
Q  200 tatttgaattgacttatttgagcttatct 228  Q
    |||||||||||||||||||||||||||||    
T  23983902 tatttgaattgacttatttgagcttatct 23983930  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 228
Target Start/End: Original strand, 23990597 - 23990625
Alignment:
Q  200 tatttgaattgacttatttgagcttatct 228  Q
    |||||||||||||||||||||||||||||    
T  23990597 tatttgaattgacttatttgagcttatct 23990625  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 234
Target Start/End: Original strand, 44458077 - 44458109
Alignment:
Q  202 tttgaattgacttatttgagcttatctgctgac 234  Q
    ||||||||||||||||| |||||||||||||||    
T  44458077 tttgaattgacttatttaagcttatctgctgac 44458109  T

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