View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20803_low_5 (Length: 585)

Name: NF20803_low_5
Description: NF20803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20803_low_5
NF20803_low_5
[»] chr8 (1 HSPs)
chr8 (8-569)||(34826611-34827172)
[»] chr2 (2 HSPs)
chr2 (10-67)||(6843087-6843144)
chr2 (10-67)||(9661851-9661908)


Alignment Details
Target: chr8 (Bit Score: 546; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 8 - 569
Target Start/End: Original strand, 34826611 - 34827172
Alignment:
Q  8 tgagatgaaggaagaatcgacatttacactagaaagtctacttttagagaatctcactttcaaaccagaagctaactcaaatcatcttagaacaatcttc 107  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  34826611 tgagatgaaggaagattcgacatttacactagaaagtctacttttagagaatctcacgttcaaaccagaagctaactcaaatcatcttagaacaatcttc 34826710  T
Q  108 attacccacaattttactacactagcctccctagttaaaagagatattgtttggttcattgaaccatccagtcccgcaaccacaagaagaaacaggaatt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34826711 attacccacaattttactacactagcctccctagttaaaagagatattgtttggttcattgaaccatccagtcccgcaaccacaagaagaaacaggaatt 34826810  T
Q  208 gaaccggcaaatatccatgctttagaccctacaaatgtctaattattcagcggaacagcgattaatcagaacagataaaccttgaatatgcacatgacct 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34826811 gaaccggcaaatatccatgctttagaccctacaaatgtctaattattcagcggaacagcgattaatcagaacagataaaccttgaatatgcacatgacct 34826910  T
Q  308 tatccaagctctcctctctgcctatttcttcatatgcattgttgcatgtatgcagtcttgagcggctaggcttagtatttttaatttcctttgcttttag 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34826911 tatccaagctctcctctctgcctatttcttcatatgcattgttgcatgtatgcagtcttgagcggctaggcttagtatttttaatttcctttgcttttag 34827010  T
Q  408 tatcataattcatgaaatttgattcagactttattgtatacttcagcatagcacatcttatgcgtaagttttttatttcttcaaataaatttctttgctt 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34827011 tatcataattcatgaaatttgattcagactttattgtatacttcagcatagcacatcttatgcgtaagttttttatttcttcaaataaatttctttgctt 34827110  T
Q  508 attaagaacacagttgtatgggttaaattacctctgatattctattaaataaatgtaattac 569  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  34827111 attaagaacacagttgtatgggttagattacctctgatattccattaaataaatgtaattac 34827172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 10 - 67
Target Start/End: Complemental strand, 6843144 - 6843087
Alignment:
Q  10 agatgaaggaagaatcgacatttacactagaaagtctacttttagagaatctcacttt 67  Q
    |||| |||||||||||||| ||||||  ||||||| |||| |||||||||||||||||    
T  6843144 agataaaggaagaatcgacgtttacatcagaaagtatactcttagagaatctcacttt 6843087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 10 - 67
Target Start/End: Original strand, 9661851 - 9661908
Alignment:
Q  10 agatgaaggaagaatcgacatttacactagaaagtctacttttagagaatctcacttt 67  Q
    |||| |||||||||||||| |||| || ||||||| |||| |||||||||||||||||    
T  9661851 agataaaggaagaatcgacgtttataccagaaagtatactcttagagaatctcacttt 9661908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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