View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20803_low_55 (Length: 254)
Name: NF20803_low_55
Description: NF20803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20803_low_55 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 13882665 - 13882428
Alignment:
| Q |
1 |
taagtgatcaccatcatttccttgttaattgtgtttatgataccaagtgatcagcatcatttcatttttaactgttttatgggactatagtgtgatcccc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| | |
|
|
| T |
13882665 |
taagtgatcaccatcatttccttgttaattgtgtttatgataccaagtgatcaacatcatttcatttttaactgttttatgggactatactgtgatcctc |
13882566 |
T |
|
| Q |
101 |
tcacttgttaagttctttgtaattgtctttctccagcatcactacaagcaatgtactgctgaatgtttgtttctttatcatggtttagagtggtgatttt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13882565 |
tcacttgttaagttctttgtaattgtctttctccagcgtcattacatgcaatgtactgctgaatgtttgtttctttatcatggtttagagtggtgatttt |
13882466 |
T |
|
| Q |
201 |
gcaagaccagttacattcacgactggggccattgctgg |
238 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
13882465 |
gcaagaccagttacattcacgattggggccatcgctgg |
13882428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 53 - 209
Target Start/End: Complemental strand, 13872141 - 13871985
Alignment:
| Q |
53 |
agcatcatttcatttttaactgttttatgggactatagtgtgatcccctcacttgttaagttctttgtaattgtctttctccagcatcactacaagcaat |
152 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||| |||| |||| || ||| |
|
|
| T |
13872141 |
agcataatttcatttttaactgttttatggaactatcaagtgatcacctcacttgttaagttctttgtaattgtctttctccggcattcctacgagtaat |
13872042 |
T |
|
| Q |
153 |
gtactgctgaatgtttgtttctttatcatggtttagagtggtgattttgcaagacca |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
13872041 |
gtactgctgaatgtttgtttctttatcatggtttagagtggtgattctgcaagacca |
13871985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 92 - 238
Target Start/End: Complemental strand, 13884382 - 13884236
Alignment:
| Q |
92 |
gtgatcccctcacttgttaagttctttgtaattgtctttctccagcatcactacaagcaatgtactgctgaatgtttgtttctttatcatggtttagagt |
191 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||||||||||| ||||| | || || ||||| |||||||||| || ||||||||||||||||||| | |
|
|
| T |
13884382 |
gtgatcacctcacttgtgaagttctttgtaattgtctttctccggcatcccaacgagtaatgtcctgctgaatgcttctttctttatcatggtttaggtt |
13884283 |
T |
|
| Q |
192 |
ggtgattttgcaagaccagttacattcacgactggggccattgctgg |
238 |
Q |
| |
|
| ||||||||||||| ||| ||||||||| | ||||||||||||||| |
|
|
| T |
13884282 |
gatgattttgcaagatcaggtacattcacaaatggggccattgctgg |
13884236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 53 - 158
Target Start/End: Complemental strand, 16025148 - 16025043
Alignment:
| Q |
53 |
agcatcatttcatttttaactgttttatgggactatagtgtgatcccctcacttgttaagttctttgtaattgtctttctccagcatcactacaagcaat |
152 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| ||||| | |||||| ||||||||| ||||||||||||||| |||||||||| || || |
|
|
| T |
16025148 |
agcaccatttcatttttaactgttttatgggactatcaaatgatcgatttacttgtgaagttctttataattgtctttctccggcatcactacgagtgat |
16025049 |
T |
|
| Q |
153 |
gtactg |
158 |
Q |
| |
|
|||||| |
|
|
| T |
16025048 |
gtactg |
16025043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 136 - 207
Target Start/End: Original strand, 40165726 - 40165794
Alignment:
| Q |
136 |
gcatcactacaagcaatgtactgctgaatgtttgtttctttatcatggtttagagtggtgattttgcaagac |
207 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||| ||| |||| |
|
|
| T |
40165726 |
gcatcactacaagtaatgtactg---aatgtttgtttctttatcatggtttaggctggtgattctgctagac |
40165794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 123
Target Start/End: Complemental strand, 13874469 - 13874401
Alignment:
| Q |
55 |
catcatttcatttttaactgttttatgggactatagtgtgatcccctcacttgttaagttctttgtaat |
123 |
Q |
| |
|
|||||||| ||||| || |||||| |||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
13874469 |
catcatttaattttcaatggttttacgggactatcaagtgatcccctcacttgttaagttctttgtaat |
13874401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 157 - 207
Target Start/End: Complemental strand, 16025007 - 16024957
Alignment:
| Q |
157 |
tgctgaatgtttgtttctttatcatggtttagagtggtgattttgcaagac |
207 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||||||||| ||| |||| |
|
|
| T |
16025007 |
tgctgaatgtttttttctttatcatggtttagggtggtgattctgctagac |
16024957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 13882695 - 13882646
Alignment:
| Q |
14 |
tcatttccttgttaattgtgtttatgataccaagtgatcagcatcatttc |
63 |
Q |
| |
|
||||||| |||||||||||||||||| ||| ||||||||| ||||||||| |
|
|
| T |
13882695 |
tcatttctttgttaattgtgtttatggtactaagtgatcaccatcatttc |
13882646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 142
Target Start/End: Original strand, 14397150 - 14397222
Alignment:
| Q |
70 |
aactgttttatgggactatagtgtgatcccctcacttgttaagttctttgtaattgtctttctccagcatcac |
142 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||| | |||||||||||||| || |||| || ||||||| |
|
|
| T |
14397150 |
aactgttttatgggactatcaagtgttcccctcacttttaaagttctttgtaatcgtgtttcaccggcatcac |
14397222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 206
Target Start/End: Original strand, 14392729 - 14392781
Alignment:
| Q |
154 |
tactgctgaatgtttgtttctttatcatggtttagagtggtgattttgcaaga |
206 |
Q |
| |
|
||||||| ||||||||| || ||||||||||||| |||| ||||| ||||||| |
|
|
| T |
14392729 |
tactgctaaatgtttgtgtcattatcatggtttaaagtgttgattctgcaaga |
14392781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University