View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20803_low_6 (Length: 545)
Name: NF20803_low_6
Description: NF20803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20803_low_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 108; Significance: 5e-54; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 7382467 - 7382598
Alignment:
| Q |
1 |
gctaaatttcatgttggcctcttgcatatattttagattttaaattggtgccatacattttgatatctctttcgttaatgatgtgagcttaaattcgtca |
100 |
Q |
| |
|
|||||||| |||| |||||||||| || ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
7382467 |
gctaaattgcatggtggcctcttgtatgtattttagattttaagttggtgccatacattttgatatctcttttgttaatgatgtgagcttaaattcgtca |
7382566 |
T |
|
| Q |
101 |
tttttgttaagattcatactctcttgaaatat |
132 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
7382567 |
tttttgttaagattcatactctcttgaaatat |
7382598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 428 - 536
Target Start/End: Original strand, 7383504 - 7383613
Alignment:
| Q |
428 |
ttactattattgctctttccacacat-aagcattgtaaaggaacttaatatactgaaaaattctaaaagtagtggtgttgactgttaagttagtggagtt |
526 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7383504 |
ttactattattgctcgttccacacattaagcattgtaaaggaacttaatatactaaaaaattctaaaagtagtggtgttgactgttaagttagtggagtt |
7383603 |
T |
|
| Q |
527 |
gtggtctgtg |
536 |
Q |
| |
|
|||||||||| |
|
|
| T |
7383604 |
gtggtctgtg |
7383613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 116 - 222
Target Start/End: Original strand, 7382614 - 7382717
Alignment:
| Q |
116 |
atactctcttgaaatatatttggctccaatgatatatttccatagcctcattttctattatcaaccttcactcttagacttacaaatatgaaaatatatc |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
7382614 |
atactctcttgaaatatatttggctccaatgatatatttccatagcctcatcttctattatcaaccttcactc---ggcttacaaatatgaaaatatatc |
7382710 |
T |
|
| Q |
216 |
attggag |
222 |
Q |
| |
|
||||||| |
|
|
| T |
7382711 |
attggag |
7382717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 216 - 301
Target Start/End: Original strand, 7383296 - 7383377
Alignment:
| Q |
216 |
attggagcctacttaatttctttcttgtggaggataagatttttcgatctcggtctgtctctcttgaaatacatactcttttgaag |
301 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||||||| ||||| | || |||||||||||||||||||||||||| |||||| |
|
|
| T |
7383296 |
attggagcctacttaacttctttattgtggaggataaggttttttggtc----tctgtctctcttgaaatacatactctcttgaag |
7383377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University