View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20803_low_62 (Length: 237)
Name: NF20803_low_62
Description: NF20803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20803_low_62 |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 18 - 218
Target Start/End: Original strand, 55380594 - 55380794
Alignment:
| Q |
18 |
caatgaactatactacatatagaattatttattggcagcaagttagtgagggttctacctccaacaaagacaccaattccaagttctatctccaacaagt |
117 |
Q |
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| T |
55380594 |
caatgaactatactacatatagaattatttattggcagcaagttagtgagggttctacctccaacaaagacaccaattccaagttctatctccaacaagt |
55380693 |
T |
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| Q |
118 |
atacctgtgcacctaaatcctgaaattcagaaataaatggcaagtagctgccttttgttaatggaattggaaacaagttgttgaatgcatgtggagtttc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55380694 |
atacctgtgcacctaaatcctgaaattcagaaataaatggcaagtagctgccttttgttaatggaattggaaacaagttgttgaatgcatgtggagtttc |
55380793 |
T |
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| Q |
218 |
c |
218 |
Q |
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| T |
55380794 |
c |
55380794 |
T |
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