View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20803_low_64 (Length: 237)
Name: NF20803_low_64
Description: NF20803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20803_low_64 |
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Alignment Details
Target: chr2 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 5 - 221
Target Start/End: Complemental strand, 3968283 - 3968052
Alignment:
| Q |
5 |
atggaataattaacagatgtttctggtgacattggcaatcttgttttatatgcatcactcacccacgagcttaatttattcctccaattatgctttttac |
104 |
Q |
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| T |
3968283 |
atggaataattaacagatgtttctggtgacattggcaatcttgttttatatgcatcactcacccacgagcttaatttattcctccaattatgctttttac |
3968184 |
T |
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| Q |
105 |
ttatggtggatactcaaacttaaagaacaagtgtgggagcaagacagtattggattaaactagaat---------------ggaaacgtggtccctagtg |
189 |
Q |
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| T |
3968183 |
ttatggtggatactcaaacttaaagaacaagtgtgtgagcaagacagtattggattaaactagaatggaaggtgccagaatggaaacgtggtccctagtg |
3968084 |
T |
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| Q |
190 |
tgaaaatgagagtataattcagaacttcagcc |
221 |
Q |
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| T |
3968083 |
tgaaaatgagagtataattcagaacttcagcc |
3968052 |
T |
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