View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20803_low_67 (Length: 229)
Name: NF20803_low_67
Description: NF20803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20803_low_67 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 4 - 229
Target Start/End: Original strand, 40724180 - 40724405
Alignment:
| Q |
4 |
tttggacataatctctggtccattaatacaaaagaagaaagctccagtttcattagcaactgctcttgctattaatgtctttccagaacctgggggtcca |
103 |
Q |
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| T |
40724180 |
tttggacataatctctggtccattaatacaaaagaagaaagctccagtttcattagcaacagctcttgctattaatgtctttccagaacctgggggtcca |
40724279 |
T |
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| Q |
104 |
tatagaaaaattcctttgggtggtttcacaccaattgacttaaaaagttgtggaagctcgaccaactcacggatctgtgccatttgcttcctaaaaccac |
203 |
Q |
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| T |
40724280 |
tatagaaaaattcctttgggtggtttcacaccaattgacttaaaaagttgtggaagctcgaccaactcacggatctgtgccatttgcttcctaaaaccac |
40724379 |
T |
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| Q |
204 |
ccacatcatcataaccgacttcatca |
229 |
Q |
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| T |
40724380 |
ccacatcatcataaccgacttcatca |
40724405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 4 - 229
Target Start/End: Complemental strand, 40665886 - 40665649
Alignment:
| Q |
4 |
tttggacataatctctggtccattaatacaaaagaagaaagctccagtttcattagcaactgctcttgctattaatgtctttccagaacctgggggtcca |
103 |
Q |
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| T |
40665886 |
tttggacataatctctggtccattaatacaaaagaagaaagctccagtttcattagcaatagctcttgctattaatgtctttccggtacctgggggtcca |
40665787 |
T |
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| Q |
104 |
tatagaaaaattcctttgggtggtttcacaccaattgacttaaaaagttg------------tggaagctcgaccaactcacggatctgtgccatttgct |
191 |
Q |
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| T |
40665786 |
gaaagcaaaattcctttaggtgctttcgcaccaattgacttaaaaagttgtggatgcctaagtggaagctcgaccaactcgcgaatctgtgccatttgct |
40665687 |
T |
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| Q |
192 |
tcctaaaaccacccacatcatcataaccgacttcatca |
229 |
Q |
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| T |
40665686 |
tcctaacaccacccacatcatcataaccaacttcatca |
40665649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 8 - 157
Target Start/End: Complemental strand, 27977293 - 27977144
Alignment:
| Q |
8 |
gacataatctctggtccattaatacaaaagaagaaagctccagtttcattagcaactgctcttgctattaatgtctttccagaacctgggggtccatata |
107 |
Q |
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| T |
27977293 |
gacatgatctcaggaccattgatacagaaaaagaaagcaccagtttcatttgcaacagctcgtgcaattaaagtcttaccagatccagggggtccataca |
27977194 |
T |
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| Q |
108 |
gaaaaattcctttgggtggtttcacaccaattgacttaaaaagttgtgga |
157 |
Q |
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| T |
27977193 |
acaaaatcccttttggtggcttcacaccaatagacttgaataattgtgga |
27977144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 105
Target Start/End: Original strand, 41093011 - 41093108
Alignment:
| Q |
8 |
gacataatctctggtccattaatacaaaagaagaaagctccagtttcattagcaactgctcttgctattaatgtctttccagaacctgggggtccata |
105 |
Q |
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| T |
41093011 |
gacattatctcagggccattaatgcagaaaaagaaggcacctgtttcatttgcaactgcccgagcaattaaagtctttccagaaccagggggtccata |
41093108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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