View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20803_low_7 (Length: 544)
Name: NF20803_low_7
Description: NF20803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20803_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 478; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 1 - 526
Target Start/End: Original strand, 33785610 - 33786136
Alignment:
| Q |
1 |
ctaccagaatatatcacaggttcttgacttactaatgcagtatgttgtctataccaatgaatatctaattctcttaaatcaacattatcaactttcactg |
100 |
Q |
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| T |
33785610 |
ctaccagaatatatcacaggttcttgacttactaatgcagtatgttgtctataccaatgaatatctaattctcttaaatccacattatcaactttcactg |
33785709 |
T |
|
| Q |
101 |
atcctctttcaacatcatagcatctttgtattaatgcaataacagttgattttccacatccactttttccaactagtccaacactttttccaggtcttac |
200 |
Q |
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| T |
33785710 |
atcctctttcaacatcatagaatctttgtattaatgcaataacagttgattttccacatccactttttccaactagtccaacactttttccaggtcttac |
33785809 |
T |
|
| Q |
201 |
ctctaagccaaatttgcgcaaaatcggtgtttttgctctgcttggatatgaaaaatcaacattctttaactctatttttccacttagctttgccaacttg |
300 |
Q |
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| T |
33785810 |
ctctaagcaaaatttgcgcaaaatcggtgtttttgctctgcttggatatgaaaaatcaacattctttaactctatttttccacttagcttttccaacttg |
33785909 |
T |
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| Q |
301 |
attccattagtttcttctccagcctaatcaaacaaacaacaaatttattaattggttacttcaacatcaaggcattaacaagctattagttgat-nnnnn |
399 |
Q |
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| T |
33785910 |
attccattagtttcttctccagcctaatcaaacaaacaacaaatttattaattggttacttcaacatcaaggcattaacaagctattagttgataaaaaa |
33786009 |
T |
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| Q |
400 |
nncgtgatttggtgattgattttctaaatctgtatcgtgatttaaatgattttttgtccgatttaaagactgatttgcaaaaaatggataaaactatggt |
499 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33786010 |
aacgtgatttggtgattgattttctaaatcggtatcgtgatttaaatgattttttgtccgatttaaagactgatttgcaaaaaatggataaaactatggt |
33786109 |
T |
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| Q |
500 |
cgataatgtttaacatttgtcattttt |
526 |
Q |
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| T |
33786110 |
cgataatgtttaacatttgtcattttt |
33786136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 113 - 193
Target Start/End: Original strand, 33789507 - 33789587
Alignment:
| Q |
113 |
catcatagcatctttgtattaatgcaataacagttgattttccacatccactttttccaactagtccaacactttttccag |
193 |
Q |
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||||||| ||||||||| |||||| || | ||||||||||||| ||||||| ||||||||| ||||| ||||||||| |
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| T |
33789507 |
catcataaaatctttgtactaatgctattgctgttgattttccacttccacttgcaccaactagtgcaacagtttttccag |
33789587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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