View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20803_low_73 (Length: 214)
Name: NF20803_low_73
Description: NF20803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20803_low_73 |
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Alignment Details
Target: chr7 (Bit Score: 166; Significance: 5e-89; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 15 - 196
Target Start/End: Complemental strand, 817930 - 817749
Alignment:
| Q |
15 |
atatataaaagcatgggcatgtagtagagccaatgagcaaattatcaaagcatacattattaattatgcgtattaaatcaacaaatcctcttgttgttgg |
114 |
Q |
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| T |
817930 |
atatataaaagcatggtcatgtagtagagccaatgagcaaattatcaaagcatacattattaattatgcgtattaaatcaacaaatcctcttgttgttgg |
817831 |
T |
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| Q |
115 |
tggtgtaattggagatgttttggatccctttacaagttcagtgtctttgagagtcgtttatgaaaataacaaagaagtcatc |
196 |
Q |
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| T |
817830 |
tggtgtaattggagaggttttggacccctttacaagttcagtgtctttgagagtcgtttatgacaataacaaagaagtcatc |
817749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 66 - 194
Target Start/End: Complemental strand, 776597 - 776469
Alignment:
| Q |
66 |
atacattattaattatgcgtattaaatcaacaaatcctcttgttgttggtggtgtaattggagatgttttggatccctttacaagttcagtgtctttgag |
165 |
Q |
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| T |
776597 |
atacattattaattatgcgtattaaatcaatgaaccctcttgtggtttgtggtgtaattggagatgttttggatccctttacaaattcagtgtctttgag |
776498 |
T |
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| Q |
166 |
agtcgtttatgaaaataacaaagaagtca |
194 |
Q |
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| T |
776497 |
ggtcgtttatgaaaataacaaagaagtca |
776469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 61 - 182
Target Start/End: Original strand, 8458718 - 8458839
Alignment:
| Q |
61 |
aaagcatacattattaattatgcgtattaaatcaacaaatcctcttgttgttggtggtgtaattggagatgttttggatccctttacaagttcagtgtct |
160 |
Q |
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| T |
8458718 |
aaagcatacattgttaattatgcgtattaaatcattaactcctcttgtggtttgtggtgtaattggagatgttttgaatccctttacaaattcagtgtct |
8458817 |
T |
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| Q |
161 |
ttgagagtcgtttatgaaaata |
182 |
Q |
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| T |
8458818 |
ttgaggattgtttatgacaata |
8458839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 776708 - 776651
Alignment:
| Q |
15 |
atatataaaagcatgggcatgtagtagagccaatgagcaaattatcaaagcatacatt |
72 |
Q |
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| T |
776708 |
atatataaaagcatggtcatgtagtagagccaatgagcaagttatcagagcatacatt |
776651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 8458640 - 8458701
Alignment:
| Q |
15 |
atatataaaagcatgggcatgtagtagagccaatgagcaaattatcaaagcatacattatta |
76 |
Q |
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| T |
8458640 |
atatataaaagcatgtgcatgtagtagggccaatgagcaagttatcaaagcacatattatta |
8458701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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