View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20803_low_75 (Length: 210)
Name: NF20803_low_75
Description: NF20803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20803_low_75 |
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Alignment Details
Target: chr7 (Bit Score: 171; Significance: 5e-92; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 14 - 188
Target Start/End: Complemental strand, 21182815 - 21182641
Alignment:
| Q |
14 |
tgagaagaacattagtggtttggccaggggcaataaggatggtgttagtctcaaaaggtttcacgtaaatagcgtcgacttcaacaactttgagggtgtg |
113 |
Q |
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| T |
21182815 |
tgagaagaacattagtggtttggccaggggcaataaggatggtgttagtctcaaaaggtttcacgtaaatagcgtcggcttcaacaactttgagggtgtg |
21182716 |
T |
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| Q |
114 |
atttgcaacgctgaagaataactcatcatttagtgcagcattgatcaaacgtagaaggtaagtctttccaggctt |
188 |
Q |
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| T |
21182715 |
atttgcaacgctgaagaataactcatcatttagtgcagcattgatcaaacgtagaaggtaagtctttccaggctt |
21182641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 14 - 188
Target Start/End: Complemental strand, 21205289 - 21205115
Alignment:
| Q |
14 |
tgagaagaacattagtggtttggccaggggcaataaggatggtgttagtctcaaaaggtttcacgtaaatagcgtcgacttcaacaactttgagggtgtg |
113 |
Q |
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| T |
21205289 |
tgagaagaacattagtggtttggccaggggcaatatagatggtgtttgtctcaaaaggtttaacataaatagcatctgcttcaacaactttgagggtatg |
21205190 |
T |
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| Q |
114 |
atttgcaacgctgaagaataactcatcatttagtgcagcattgatcaaacgtagaaggtaagtctttccaggctt |
188 |
Q |
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| T |
21205189 |
atttgcaatgctgaagaacaactcatcattcagcgcagcgttgatcaaacgtagaaggtaggtttttccaggctt |
21205115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 14 - 181
Target Start/End: Complemental strand, 21853516 - 21853349
Alignment:
| Q |
14 |
tgagaagaacattagtggtttggccaggggcaataaggatggtgttagtctcaaaaggtttcacgtaaatagcgtcgacttcaacaactttgagggtgtg |
113 |
Q |
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| T |
21853516 |
tgagaagaacattagtggtttgtccaggtgcaattaggattgtgtttgtgacaaaaggttttgcataaactgcatctgcttcaacaactgtgagagtgtg |
21853417 |
T |
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| Q |
114 |
atttgcaacgctgaagaataactcatcatttagtgcagcattgatcaaacgtagaaggtaagtctttc |
181 |
Q |
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| T |
21853416 |
gtttgctatgctgaagaataattcgtcgtttagtgcggcgttgattaaacgaagaaggtaagtctttc |
21853349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 105 - 158
Target Start/End: Original strand, 22636196 - 22636249
Alignment:
| Q |
105 |
gagggtgtgatttgcaacgctgaagaataactcatcatttagtgcagcattgat |
158 |
Q |
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| T |
22636196 |
gagggtgtgattagcaatgctaaagaacatctcatcattgagtgcagcattgat |
22636249 |
T |
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