View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20803_low_8 (Length: 539)

Name: NF20803_low_8
Description: NF20803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20803_low_8
NF20803_low_8
[»] chr1 (4 HSPs)
chr1 (38-539)||(395438-395937)
chr1 (48-125)||(28375690-28375766)
chr1 (43-115)||(31972636-31972708)
chr1 (58-122)||(29529081-29529144)
[»] chr7 (12 HSPs)
chr7 (50-125)||(18343910-18343985)
chr7 (50-125)||(18347439-18347514)
chr7 (50-125)||(18344813-18344888)
chr7 (50-125)||(18581948-18582023)
chr7 (50-123)||(19531553-19531626)
chr7 (49-123)||(42681338-42681411)
chr7 (50-125)||(31299699-31299773)
chr7 (50-123)||(42681195-42681267)
chr7 (65-115)||(9901996-9902046)
chr7 (65-115)||(21515998-21516048)
chr7 (65-115)||(28029733-28029783)
chr7 (65-115)||(36430608-36430658)
[»] chr3 (2 HSPs)
chr3 (48-123)||(45082746-45082821)
chr3 (50-122)||(30440644-30440715)
[»] chr5 (9 HSPs)
chr5 (45-130)||(10050870-10050955)
chr5 (50-124)||(6685889-6685963)
chr5 (54-119)||(9246609-9246674)
chr5 (50-125)||(4195747-4195821)
chr5 (50-125)||(34180899-34180973)
chr5 (65-115)||(3432382-3432432)
chr5 (65-115)||(4630401-4630451)
chr5 (65-115)||(16167781-16167831)
chr5 (65-115)||(35885773-35885823)
[»] chr4 (10 HSPs)
chr4 (47-119)||(748590-748662)
chr4 (50-125)||(1452387-1452462)
chr4 (48-124)||(53051467-53051542)
chr4 (50-122)||(14066299-14066370)
chr4 (64-115)||(32270455-32270506)
chr4 (44-115)||(40818912-40818983)
chr4 (44-115)||(42243869-42243940)
chr4 (65-115)||(7328098-7328148)
chr4 (65-115)||(7984535-7984585)
chr4 (65-115)||(29275996-29276046)
[»] chr8 (5 HSPs)
chr8 (47-124)||(41264116-41264192)
chr8 (44-115)||(4362751-4362822)
chr8 (65-115)||(12132478-12132528)
chr8 (65-115)||(14694837-14694887)
chr8 (65-115)||(33332331-33332381)
[»] chr2 (3 HSPs)
chr2 (65-115)||(5246077-5246127)
chr2 (65-115)||(43903894-43903944)
chr2 (57-122)||(17955705-17955769)


Alignment Details
Target: chr1 (Bit Score: 373; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 38 - 539
Target Start/End: Original strand, 395438 - 395937
Alignment:
Q  38 aaatctaaaaaacgccgtctgtgggaatcgaacccacgaccacacggttaaaagccgtgcgctctaccagctgagctaagacggcttgatgttttattaa 137  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||        
T  395438 aaatctaaaaaacgccgtctgtgggaatcgaacccacgaccacacggttaaaagccgtgcgctctaccagctgagctaagacggcttagtgtttta---- 395533  T
Q  138 gaggtttaataatataaatatttttatatataaatgattgttttcgtttagctataacata-----tccagtatcttacaattgttcttattttgagttg 232  Q
            |||| |||||||| |||||||||| |||||||||| |||||||||||||||||     ||||||||||||||||||||||||||||||||||    
T  395534 --------ataacataaatatatttatatatatatgattgtttccgtttagctataacataacatatccagtatcttacaattgttcttattttgagttg 395625  T
Q  233 tgcagctaaaacccagatagaacccccaaaaacgattcgaaattaatccattaatttaaaacgctatgtttggcgcttcttcaattttgttccctctatc 332  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  395626 tgcagctaaaacccagatagaacccc-aaaaacgattcgaaattaatccattaatttaaaacgctatgtttggcgcttcttcaattttgttccctctatc 395724  T
Q  333 cacacaagcatctccttacatttttccaaacttaacaacttccacttaccaagagtgttttaagttgaagcagaatctggtaaaagttaaaaagaagaat 432  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  395725 cacacaagcatctccttacatttttccaaacttaacaacttccacttaccaagagtgttttaagttgaagcagaatctggtaaaagttaaaaagaagaat 395824  T
Q  433 cgattaatggtgtta------agcagcagcagcgatacgagttaggaagttggtggtggattgccacgtaacgaacttcttaaccgaaaggaaaactcag 526  Q
    |||||||| ||||||      ||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||  |||||||||    
T  395825 cgattaattgtgttaagcagcagcagcagcagcgatacgagttatgaagttggtggtggatttccacttaacgaacttcttaaccgaaataaaaactcag 395924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 48 - 125
Target Start/End: Original strand, 28375690 - 28375766
Alignment:
Q  48 aacgccgtctgtgggaatcgaacccacgaccacacggttaaaagccgtgcgctctaccagctgagctaagacggcttg 125  Q
    ||||||| ||||||| |||||||||||||||||  |||||||||||  ||||||||||| |||||||||| |||||||    
T  28375690 aacgccgactgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctacca-ctgagctaagtcggcttg 28375766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 43 - 115
Target Start/End: Original strand, 31972636 - 31972708
Alignment:
Q  43 taaaaaacgccgtctgtgggaatcgaacccacgaccacacggttaaaagccgtgcgctctaccagctgagcta 115  Q
    |||||||||||  | |||||  ||||||||||||||||| |||||| |||| |||||||||||| ||||||||    
T  31972636 taaaaaacgcccaccgtggggctcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagcta 31972708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 58 - 122
Target Start/End: Original strand, 29529081 - 29529144
Alignment:
Q  58 gtgggaatcgaacccacgaccacacggttaaaagccgtgcgctctaccagctgagctaagacggc 122  Q
    ||||| |||||||||||||||||  |||||||||||  ||||||||||| |||||||||| ||||    
T  29529081 gtggggatcgaacccacgaccacgtggttaaaagccacgcgctctacca-ctgagctaagtcggc 29529144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 4e-30; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 50 - 125
Target Start/End: Complemental strand, 18343985 - 18343910
Alignment:
Q  50 cgccgtctgtgggaatcgaacccacgaccacacggttaaaagccgtgcgctctaccagctgagctaagacggcttg 125  Q
    |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  18343985 cgccgtctgtgggaatcgaacccacgaccacatggttaaaagccatgcgctctaccagctgagctaagacggcttg 18343910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 50 - 125
Target Start/End: Complemental strand, 18347514 - 18347439
Alignment:
Q  50 cgccgtctgtgggaatcgaacccacgaccacacggttaaaagccgtgcgctctaccagctgagctaagacggcttg 125  Q
    |||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  18347514 cgccatctgtgggaatcgaacccacgaccacatggttaaaagccatgcgctctaccagctgagctaagacggcttg 18347439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 50 - 125
Target Start/End: Complemental strand, 18344888 - 18344813
Alignment:
Q  50 cgccgtctgtgggaatcgaacccacgaccacacggttaaaagccgtgcgctctaccagctgagctaagacggcttg 125  Q
    |||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||    
T  18344888 cgccgtctgtggcaatcgaacccacgaccacatggttaaaagccatgcgctctaccagctgagctaagacgacttg 18344813  T

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Target: chr7; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 50 - 125
Target Start/End: Original strand, 18581948 - 18582023
Alignment:
Q  50 cgccgtctgtgggaatcgaacccacgaccacacggttaaaagccgtgcgctctaccagctgagctaagacggcttg 125  Q
    |||||||||||||||||||||||||||||||  |||||||||||  ||||||||||||||||||||||||||||||    
T  18581948 cgccgtctgtgggaatcgaacccacgaccacgtggttaaaagccacgcgctctaccagctgagctaagacggcttg 18582023  T

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Target: chr7; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 50 - 123
Target Start/End: Complemental strand, 19531626 - 19531553
Alignment:
Q  50 cgccgtctgtgggaatcgaacccacgaccacacggttaaaagccgtgcgctctaccagctgagctaagacggct 123  Q
    |||||||||||||||||||||||||||||||  |||||||||||  ||||||||||||||||||||||||||||    
T  19531626 cgccgtctgtgggaatcgaacccacgaccacgtggttaaaagccacgcgctctaccagctgagctaagacggct 19531553  T

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Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 49 - 123
Target Start/End: Original strand, 42681338 - 42681411
Alignment:
Q  49 acgccgtctgtgggaatcgaacccacgaccacacggttaaaagccgtgcgctctaccagctgagctaagacggct 123  Q
    |||||||||||||| |||||||||||||||||  |||||||||||  ||||||||||| ||||||||||||||||    
T  42681338 acgccgtctgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctacca-ctgagctaagacggct 42681411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 50 - 125
Target Start/End: Complemental strand, 31299773 - 31299699
Alignment:
Q  50 cgccgtctgtgggaatcgaacccacgaccacacggttaaaagccgtgcgctctaccagctgagctaagacggcttg 125  Q
    ||||| ||||||| |||||||||||||||||  |||||||||||  ||||||||||| |||||||||| |||||||    
T  31299773 cgccgactgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctacca-ctgagctaagtcggcttg 31299699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 50 - 123
Target Start/End: Original strand, 42681195 - 42681267
Alignment:
Q  50 cgccgtctgtgggaatcgaacccacgaccacacggttaaaagccgtgcgctctaccagctgagctaagacggct 123  Q
    ||||| ||||||| |||||||||||||||||  |||||||||||  ||||||||||| |||||||||| |||||    
T  42681195 cgccgactgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctacca-ctgagctaagtcggct 42681267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 65 - 115
Target Start/End: Complemental strand, 9902046 - 9901996
Alignment:
Q  65 tcgaacccacgaccacacggttaaaagccgtgcgctctaccagctgagcta 115  Q
    ||||||||||||||||| |||||| |||| |||||||||||| ||||||||    
T  9902046 tcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagcta 9901996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 65 - 115
Target Start/End: Complemental strand, 21516048 - 21515998
Alignment:
Q  65 tcgaacccacgaccacacggttaaaagccgtgcgctctaccagctgagcta 115  Q
    ||||||||||||||||| |||||| |||| |||||||||||| ||||||||    
T  21516048 tcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagcta 21515998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 65 - 115
Target Start/End: Original strand, 28029733 - 28029783
Alignment:
Q  65 tcgaacccacgaccacacggttaaaagccgtgcgctctaccagctgagcta 115  Q
    ||||||||||||||||| |||||| |||| |||||||||||| ||||||||    
T  28029733 tcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagcta 28029783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 65 - 115
Target Start/End: Original strand, 36430608 - 36430658
Alignment:
Q  65 tcgaacccacgaccacacggttaaaagccgtgcgctctaccagctgagcta 115  Q
    ||||||||||||||||| |||||| |||| |||||||||||| ||||||||    
T  36430608 tcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagcta 36430658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 4e-30; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 48 - 123
Target Start/End: Original strand, 45082746 - 45082821
Alignment:
Q  48 aacgccgtctgtgggaatcgaacccacgaccacacggttaaaagccgtgcgctctaccagctgagctaagacggct 123  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  45082746 aacgccgtctgtgggaatcgaacccacgaccacatggttaaaagccatgcgctctaccagctgagctaagacggct 45082821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 50 - 122
Target Start/End: Complemental strand, 30440715 - 30440644
Alignment:
Q  50 cgccgtctgtgggaatcgaacccacgaccacacggttaaaagccgtgcgctctaccagctgagctaagacggc 122  Q
    ||||||||||||| |||||||||||||||||  |||||||||||  ||||||||||| |||||||||||||||    
T  30440715 cgccgtctgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctacca-ctgagctaagacggc 30440644  T

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Target: chr5 (Bit Score: 66; Significance: 6e-29; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 45 - 130
Target Start/End: Original strand, 10050870 - 10050955
Alignment:
Q  45 aaaaacgccgtctgtgggaatcgaacccacgaccacacggttaaaagccgtgcgctctaccagctgagctaagacggcttgatgtt 130  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||  |||||||||||||||||||||||||||||| ||||    
T  10050870 aaaaacgccgtctgtgggaatcgaacccacgaccacgtggttaaaagccacgcgctctaccagctgagctaagacggcttggtgtt 10050955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 50 - 124
Target Start/End: Original strand, 6685889 - 6685963
Alignment:
Q  50 cgccgtctgtgggaatcgaacccacgaccacacggttaaaagccgtgcgctctaccagctgagctaagacggctt 124  Q
    |||||||||||||||||||||||||||||||  |||||||||||  |||||||||||||||||||||||||||||    
T  6685889 cgccgtctgtgggaatcgaacccacgaccacgtggttaaaagccacgcgctctaccagctgagctaagacggctt 6685963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 54 - 119
Target Start/End: Complemental strand, 9246674 - 9246609
Alignment:
Q  54 gtctgtgggaatcgaacccacgaccacacggttaaaagccgtgcgctctaccagctgagctaagac 119  Q
    |||||||||||||||||||||||||||  |||||||||||  ||||||||||||||||||||||||    
T  9246674 gtctgtgggaatcgaacccacgaccacgtggttaaaagccacgcgctctaccagctgagctaagac 9246609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 50 - 125
Target Start/End: Original strand, 4195747 - 4195821
Alignment:
Q  50 cgccgtctgtgggaatcgaacccacgaccacacggttaaaagccgtgcgctctaccagctgagctaagacggcttg 125  Q
    ||||||||||||| |||||||||||||||||  |||||||||||  ||||||||||| ||||||||||||||||||    
T  4195747 cgccgtctgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctacca-ctgagctaagacggcttg 4195821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 50 - 125
Target Start/End: Complemental strand, 34180973 - 34180899
Alignment:
Q  50 cgccgtctgtgggaatcgaacccacgaccacacggttaaaagccgtgcgctctaccagctgagctaagacggcttg 125  Q
    ||||| ||||||| |||||||||||||||||  |||||||||||  ||||||||||| |||||||||| |||||||    
T  34180973 cgccgactgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctacca-ctgagctaagtcggcttg 34180899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 65 - 115
Target Start/End: Complemental strand, 3432432 - 3432382
Alignment:
Q  65 tcgaacccacgaccacacggttaaaagccgtgcgctctaccagctgagcta 115  Q
    ||||||||||||||||| |||||| |||| |||||||||||| ||||||||    
T  3432432 tcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagcta 3432382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 65 - 115
Target Start/End: Complemental strand, 4630451 - 4630401
Alignment:
Q  65 tcgaacccacgaccacacggttaaaagccgtgcgctctaccagctgagcta 115  Q
    ||||||||||||||||| |||||| |||| |||||||||||| ||||||||    
T  4630451 tcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagcta 4630401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 65 - 115
Target Start/End: Complemental strand, 16167831 - 16167781
Alignment:
Q  65 tcgaacccacgaccacacggttaaaagccgtgcgctctaccagctgagcta 115  Q
    ||||||||||||||||| |||||| |||| |||||||||||| ||||||||    
T  16167831 tcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagcta 16167781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 65 - 115
Target Start/End: Original strand, 35885773 - 35885823
Alignment:
Q  65 tcgaacccacgaccacacggttaaaagccgtgcgctctaccagctgagcta 115  Q
    ||||||||||||||||| |||||| |||| |||||||||||| ||||||||    
T  35885773 tcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagcta 35885823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 6e-26; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 47 - 119
Target Start/End: Complemental strand, 748662 - 748590
Alignment:
Q  47 aaacgccgtctgtgggaatcgaacccacgaccacacggttaaaagccgtgcgctctaccagctgagctaagac 119  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  748662 aaacgccgtctgtgggaatcaaacccacgaccacatggttaaaagccatgcgctctaccagctgagctaagac 748590  T

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Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 50 - 125
Target Start/End: Original strand, 1452387 - 1452462
Alignment:
Q  50 cgccgtctgtgggaatcgaacccacgaccacacggttaaaagccgtgcgctctaccagctgagctaagacggcttg 125  Q
    |||||||||||||||||||||||||||||||  |||||||||||  ||||||||||||||||||||||||||||||    
T  1452387 cgccgtctgtgggaatcgaacccacgaccacgtggttaaaagccacgcgctctaccagctgagctaagacggcttg 1452462  T

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Target: chr4; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 48 - 124
Target Start/End: Original strand, 53051467 - 53051542
Alignment:
Q  48 aacgccgtctgtgggaatcgaacccacgaccacacggttaaaagccgtgcgctctaccagctgagctaagacggctt 124  Q
    ||||||||||||||| |||||||||||||||||  |||||||||||  ||||||||||| |||||||||||||||||    
T  53051467 aacgccgtctgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctacca-ctgagctaagacggctt 53051542  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 50 - 122
Target Start/End: Original strand, 14066299 - 14066370
Alignment:
Q  50 cgccgtctgtgggaatcgaacccacgaccacacggttaaaagccgtgcgctctaccagctgagctaagacggc 122  Q
    ||||| ||||||| |||||||||||||||||  |||||||||||  ||||||||||| |||||||||| ||||    
T  14066299 cgccgactgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctacca-ctgagctaagtcggc 14066370  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 64 - 115
Target Start/End: Complemental strand, 32270506 - 32270455
Alignment:
Q  64 atcgaacccacgaccacacggttaaaagccgtgcgctctaccagctgagcta 115  Q
    |||||||||||||||||| |||||| |||| |||||||||||| ||||||||    
T  32270506 atcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagcta 32270455  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 44 - 115
Target Start/End: Original strand, 40818912 - 40818983
Alignment:
Q  44 aaaaaacgccgtctgtgggaatcgaacccacgaccacacggttaaaagccgtgcgctctaccagctgagcta 115  Q
    ||||||||||  | |||||  ||||||||||||||||| |||||| |||| |||||||||||| ||||||||    
T  40818912 aaaaaacgcccaccgtggggctcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagcta 40818983  T

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Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 44 - 115
Target Start/End: Complemental strand, 42243940 - 42243869
Alignment:
Q  44 aaaaaacgccgtctgtgggaatcgaacccacgaccacacggttaaaagccgtgcgctctaccagctgagcta 115  Q
    ||||||||||  | |||||  ||||||||||||||||| |||||| |||| |||||||||||| ||||||||    
T  42243940 aaaaaacgcccaccgtggggctcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagcta 42243869  T

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Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 65 - 115
Target Start/End: Original strand, 7328098 - 7328148
Alignment:
Q  65 tcgaacccacgaccacacggttaaaagccgtgcgctctaccagctgagcta 115  Q
    ||||||||||||||||| |||||| |||| |||||||||||| ||||||||    
T  7328098 tcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagcta 7328148  T

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Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 65 - 115
Target Start/End: Complemental strand, 7984585 - 7984535
Alignment:
Q  65 tcgaacccacgaccacacggttaaaagccgtgcgctctaccagctgagcta 115  Q
    ||||||||||||||||| |||||| |||| |||||||||||| ||||||||    
T  7984585 tcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagcta 7984535  T

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Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 65 - 115
Target Start/End: Original strand, 29275996 - 29276046
Alignment:
Q  65 tcgaacccacgaccacacggttaaaagccgtgcgctctaccagctgagcta 115  Q
    ||||||||||||||||| |||||| |||| |||||||||||| ||||||||    
T  29275996 tcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagcta 29276046  T

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Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 47 - 124
Target Start/End: Complemental strand, 41264192 - 41264116
Alignment:
Q  47 aaacgccgtctgtgggaatcgaacccacgaccacacggttaaaagccgtgcgctctaccagctgagctaagacggctt 124  Q
    |||||||| ||||||| |||||||||||||||||  |||||||||||  ||||||||||| |||||||||| ||||||    
T  41264192 aaacgccgactgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctacca-ctgagctaagtcggctt 41264116  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 44 - 115
Target Start/End: Original strand, 4362751 - 4362822
Alignment:
Q  44 aaaaaacgccgtctgtgggaatcgaacccacgaccacacggttaaaagccgtgcgctctaccagctgagcta 115  Q
    ||||||||||  | |||||  ||||||||||||||||| |||||| |||| |||||||||||| ||||||||    
T  4362751 aaaaaacgcccaccgtggggctcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagcta 4362822  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 65 - 115
Target Start/End: Complemental strand, 12132528 - 12132478
Alignment:
Q  65 tcgaacccacgaccacacggttaaaagccgtgcgctctaccagctgagcta 115  Q
    ||||||||||||||||| |||||| |||| |||||||||||| ||||||||    
T  12132528 tcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagcta 12132478  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 65 - 115
Target Start/End: Complemental strand, 14694887 - 14694837
Alignment:
Q  65 tcgaacccacgaccacacggttaaaagccgtgcgctctaccagctgagcta 115  Q
    ||||||||||||||||| |||||| |||| |||||||||||| ||||||||    
T  14694887 tcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagcta 14694837  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 65 - 115
Target Start/End: Original strand, 33332331 - 33332381
Alignment:
Q  65 tcgaacccacgaccacacggttaaaagccgtgcgctctaccagctgagcta 115  Q
    ||||||||||||||||| |||||| |||| |||||||||||| ||||||||    
T  33332331 tcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagcta 33332381  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 65 - 115
Target Start/End: Complemental strand, 5246127 - 5246077
Alignment:
Q  65 tcgaacccacgaccacacggttaaaagccgtgcgctctaccagctgagcta 115  Q
    ||||||||||||||||| |||||| |||| |||||||||||| ||||||||    
T  5246127 tcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagcta 5246077  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 65 - 115
Target Start/End: Original strand, 43903894 - 43903944
Alignment:
Q  65 tcgaacccacgaccacacggttaaaagccgtgcgctctaccagctgagcta 115  Q
    ||||||||||||||||| |||||| |||| |||||||||||| ||||||||    
T  43903894 tcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagcta 43903944  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 122
Target Start/End: Complemental strand, 17955769 - 17955705
Alignment:
Q  57 tgtgggaatcgaacccacgaccacacggttaaaagccgtgcgctctaccagctgagctaagacggc 122  Q
    |||||| ||| |||||||||||||  |||||||||||  ||||||||||| |||||||||| ||||    
T  17955769 tgtggggatcaaacccacgaccacgtggttaaaagccacgcgctctacca-ctgagctaagtcggc 17955705  T

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