View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20804_high_10 (Length: 419)
Name: NF20804_high_10
Description: NF20804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20804_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 14 - 387
Target Start/End: Complemental strand, 38744434 - 38744060
Alignment:
| Q |
14 |
accaaatacatgttacaaaatcccaatatacattatcacaagatattgatgaagaaattggacacattgttatgagaaaaatagtaacaaaagctacaat |
113 |
Q |
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| T |
38744434 |
accaaagacatgttacaaaatcccaatatacattatcacaagatattgatgaagaaattggacacattgttatgagaaaaatagtaacaaaagctacaat |
38744335 |
T |
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| Q |
114 |
gtgagccatgttgctaaacaaaaatattgttttgctatagttgagtacttctggttacnnnnnnnnnnnnataatgtctttggaga--tgtgtatcatac |
211 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |
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| T |
38744334 |
gtgagccatgttggtaaacaaaaatattgttttgctatagttgagtacttctggttactatatatatataataatgtctttggagatgtgtgtatcatac |
38744235 |
T |
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| Q |
212 |
agagtatatcaattaagcacgtattgtagatannnnnnnatgtatctaagaaatgtacaagtttcatgcacacgtgaattatggaaagtttgttaagaat |
311 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38744234 |
agagtatatcaattaagcacgtattgtagatatttttttatgtatctaagaaatgtacaagtttcatgcacacgtgaattatggaaagtttgttaagaat |
38744135 |
T |
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| Q |
312 |
tttttactnnnnnnntttctaacacctgtgttattatggtataactggaaacttggtactatgatgtcattatgag |
387 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38744134 |
tttttact-aaaaaatttctaacacctgtgttattatggtataactggaaacttggtactatgatgtcattatgag |
38744060 |
T |
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