View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20804_high_14 (Length: 394)
Name: NF20804_high_14
Description: NF20804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20804_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 174; Significance: 2e-93; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 197 - 370
Target Start/End: Original strand, 48515147 - 48515320
Alignment:
| Q |
197 |
aggcttaatttaaatgccttgtatagaccacaatataactatataattttgatgagctagcaacactctttctatctatctttctcgaatactcctttat |
296 |
Q |
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| T |
48515147 |
aggcttaatttaaatgccttgtatagaccacaatataactatataattttgatgagctagcaacactctttctatctatctttctcgaatactcctttat |
48515246 |
T |
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| Q |
297 |
atatcacttcttttgaaattatgaaatttgcatagataaatataataacacttatttggatatactccctttaa |
370 |
Q |
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| T |
48515247 |
atatcacttcttttgaaattatgaaatttgcatagataaatataataacacttatttggatatactccctttaa |
48515320 |
T |
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Target: chr3; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 12 - 210
Target Start/End: Original strand, 48514929 - 48515127
Alignment:
| Q |
12 |
atgaacaaccatttagaccaactcatnnnnnnntcacaccaagaactagttttataaatgagaaagagtaatagagaaatggatgaagaaacggatagag |
111 |
Q |
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| T |
48514929 |
atgaacaaccatttagaccaactcataaaaaaatcacaccaagaactagttttataaatgagaaagagtaatagagaaatggatgaagaaacggatagag |
48515028 |
T |
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| Q |
112 |
agacaacacaacattgaggactttctttatttgtttccctatatacaattccaaatattaattttctaacaaaaatatttatgttaggcttaatttaaa |
210 |
Q |
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| T |
48515029 |
agacaacacaacattgaggactttctttgtatgtttccctatatacaattccaaatattaattttctaacaaaaatatttatgttaggcttaatttaaa |
48515127 |
T |
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