View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20804_high_15 (Length: 389)
Name: NF20804_high_15
Description: NF20804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20804_high_15 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 25 - 254
Target Start/End: Original strand, 26925155 - 26925384
Alignment:
| Q |
25 |
tgtgaaaattcaaaccacataaattgaaagacaccccacttcaaaggacaattttgtcaattcaaattcaaatccacatatagttccttaattattaact |
124 |
Q |
| |
|
||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26925155 |
tgtgaaaattcaaaccacataaattgaaatataccctacttcaaaggacaattttgtcaattcaaattcaaatccacatatagttccttaattattaact |
26925254 |
T |
|
| Q |
125 |
agaacatcacatcacaattattatttaattgaatacttcatttacattatgagtatggttggtgctatatatacctaagtaacctcatacctttttcctc |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26925255 |
agaacatcacatcacaattattatttaattgaacccttcatttacattatgagtatggttggtgctatatatacctaagtaacctcatacctttttcctc |
26925354 |
T |
|
| Q |
225 |
ggttcaaacaatcccaaaagactcaaacaa |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
26925355 |
ggttcaaacaatcccaaaagactcaaacaa |
26925384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 298 - 371
Target Start/End: Original strand, 26925428 - 26925501
Alignment:
| Q |
298 |
gcatagaaggtatagtaatatgggtaatagcttaaggtgttgtttggcttgtgttcttccttgtggggcactag |
371 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26925428 |
gcatagaaggtatagtaatatgggtaatagcttaaggtgttgtttggcttgtgttcttccttgtggggcactag |
26925501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 317 - 371
Target Start/End: Original strand, 31538036 - 31538090
Alignment:
| Q |
317 |
atgggtaatagcttaaggtgttgtttggcttgtgttcttccttgtggggcactag |
371 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
31538036 |
atggggaatagcttaaggtgttgtttggcttgtgttcttccatgtggagcactag |
31538090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University