View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20804_high_20 (Length: 307)
Name: NF20804_high_20
Description: NF20804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20804_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 29145202 - 29144905
Alignment:
| Q |
1 |
tcaatttaaagtgtcgatgctacgagaaaagaaaactaacctggcttgaggaactcgatttcgatgcagggttggcttcattttgaccaacaacttgatc |
100 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29145202 |
tcaatttaaagtgttgatgctacgagaaaagaaaactaacctggcttgaggagcccgatttcgatgcagggttggcttcattttgaccaacaacttgatc |
29145103 |
T |
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| Q |
101 |
ctttttatcatcaaccttagttaataccaagctagaatcataatctgaagagccatctaaaaaagttgtgtcgctgagcaaagatctagttgaaccatgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29145102 |
ctttttatcatcaaccttagttaataccaagctagaatcataatctgaagagccatctaaaaaagttgtgtcgctgagcaaagatctagttgaaccatgt |
29145003 |
T |
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| Q |
201 |
ggagtaattgagtcagaatttggcttaaccaatctccttttcagaatggaatcaattgtcttagaagagtaactgttagtgacattttcctctgtgct |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
29145002 |
ggagtaattgagtcagaatttggcttaaccaatctccttttcagaatggaatcaatcgtcttagaagagtaactgttagtgacattttcctctgtgct |
29144905 |
T |
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