View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20804_high_29 (Length: 260)
Name: NF20804_high_29
Description: NF20804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20804_high_29 |
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Alignment Details
Target: chr2 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 150 - 249
Target Start/End: Complemental strand, 37731027 - 37730930
Alignment:
| Q |
150 |
ttatgtttggcaaatgatttgatagaaaaacaaatgcccatacaggacgaatataaaaatgtgaatatatatatgtcaaacaaatattgcaatcacaggt |
249 |
Q |
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| T |
37731027 |
ttatgtttggcaaatgatttgatagaaaaacaaatgcccatacaggacgaatataaaaatgtgaatat--atatgtcaaacaaatattgcaatcacaggt |
37730930 |
T |
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Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 98
Target Start/End: Complemental strand, 37731362 - 37731281
Alignment:
| Q |
17 |
agatacattatctaaattgtactatcgaagacgccccaacatgctctgaaaagaaagacgtcccaacattaacactcgtagt |
98 |
Q |
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| T |
37731362 |
agatacattatctaaattgtactatcgaagacgccccaacatgctctgaaaagaaagacgtcccaacattagcactcgtagt |
37731281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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