View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20804_high_30 (Length: 257)
Name: NF20804_high_30
Description: NF20804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20804_high_30 |
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| [»] chr5 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 12 - 257
Target Start/End: Original strand, 29204306 - 29204551
Alignment:
| Q |
12 |
atgaatcaaataattactttgcagaaacaaagctagagagattgatttagcgaactatgttattaaacagtgcgtacaaaaagcatgtatctattcctga |
111 |
Q |
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| T |
29204306 |
atgaatcaaataattactttgcagaaacaaagctagagagattgatttagcgaactatgttattaaacagtgcgtacaaaaagcatgtatctattcctga |
29204405 |
T |
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| Q |
112 |
agttgtaaaataaaactagtattattcagtccagcaatggtgttatagcttatagaaaccattagtatagaaagtcttgtcaaattaactaactgaataa |
211 |
Q |
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| T |
29204406 |
agttgtaaaataaaactagtattattcagtccagcaatggtgttatagcttatagaaaccattagtatagaaagtcttgtcaaattaactaactgaataa |
29204505 |
T |
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| Q |
212 |
ttagaaaacgtttaaactattctttgatatttttgtaggttctgaa |
257 |
Q |
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| T |
29204506 |
ttagaaaacgtttaaactattctttgatatttttgtaggttctgaa |
29204551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 12 - 257
Target Start/End: Complemental strand, 12647570 - 12647325
Alignment:
| Q |
12 |
atgaatcaaataattactttgcagaaacaaagctagagagattgatttagcgaactatgttattaaacagtgcgtacaaaaagcatgtatctattcctga |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
12647570 |
atgaatcaaataattactttgcagaaacaaagctagagagattgatttagcaaactatgttattaaacagtgcatacaaaaagcatgtatccattcctga |
12647471 |
T |
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| Q |
112 |
agttgtaaaataaaactagtattattcagtccagcaatggtgttatagcttatagaaaccattagtatagaaagtcttgtcaaattaactaactgaataa |
211 |
Q |
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| T |
12647470 |
agttgtaaaataaaactagtattattcagtccagcaacggtgttatagcttatagaaaccattagaatagaaagtcttgtcaaattaactaactgaataa |
12647371 |
T |
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| Q |
212 |
ttagaaaacgtttaaactattctttgatatttttgtaggttctgaa |
257 |
Q |
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| T |
12647370 |
ttagaaaacgtttaaactattccttgatatttttgtaggttctgaa |
12647325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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