View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20804_high_33 (Length: 250)
Name: NF20804_high_33
Description: NF20804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20804_high_33 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 3 - 242
Target Start/End: Original strand, 14389016 - 14389254
Alignment:
| Q |
3 |
agtgagcggttagtaaatgcaaatgtctcgccagcatctggtcgaatggagctaagtaatggaagaataaagatacataatgcatcaggtaaggaacctg |
102 |
Q |
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| T |
14389016 |
agtgagcggttagtaaatgctaatgtctcgccagcatctggccgaatggagctaagta-tggaagaataaagatacataatgcatcaggtaaggaacctg |
14389114 |
T |
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| Q |
103 |
cttcaagaataatgacaattcttgatgcttaccctacaatttatctnnnnnnntaccttgtaattattttctcctttcattttcatattttacttcttat |
202 |
Q |
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| T |
14389115 |
cttcaagaataatgacaattcttgatgcttaccctacaatttatctaaaaaaataccttgtaattattttctcctttcattttcatattttacttcttat |
14389214 |
T |
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| Q |
203 |
gataagtgattggaactgagatatctctttttcctttgct |
242 |
Q |
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| T |
14389215 |
gataagtgattggaactgagatatctctttttcctttgct |
14389254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 4 - 199
Target Start/End: Complemental strand, 16026087 - 16025902
Alignment:
| Q |
4 |
gtgagcggttagtaaatgcaaatgtctcgccagcatctggtcgaatggagctaagtaatggaagaataaagatacataatgcatcaggtaaggaacctgc |
103 |
Q |
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| T |
16026087 |
gtgagcggttagagaatgctaatgtctcgccagcatctgg---aatggagctaagtaatggaagaacagagatagataacacatcaggtacggaacttgg |
16025991 |
T |
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| Q |
104 |
ttcaagaataatgacaattcttgatgcttaccctacaatttatctnnnnnnntaccttgtaattattttctcctttcattttcatattttacttct |
199 |
Q |
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| T |
16025990 |
ttcaagaattaagac---gcttgatgcttaccc----attgatctaaaagaataccttgtaattattttctcctttcatattcatatgttacttct |
16025902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 134
Target Start/End: Complemental strand, 26204577 - 26204492
Alignment:
| Q |
49 |
tggagctaagtaatggaagaataaagatacataatgcatcaggtaaggaacctgcttcaagaataatgacaattcttgatgcttac |
134 |
Q |
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|||||| |||||| ||||||| ||| ||| |||||||||||||| ||||| || | |||||| |||||||| |||||||||||| |
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| T |
26204577 |
tggagcaaagtaacggaagaacaaacataaataatgcatcaggttgggaacttgataaaagaatgatgacaatacttgatgcttac |
26204492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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