View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20804_high_37 (Length: 247)

Name: NF20804_high_37
Description: NF20804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20804_high_37
NF20804_high_37
[»] chr2 (1 HSPs)
chr2 (5-236)||(38743811-38744045)
[»] scaffold0009 (1 HSPs)
scaffold0009 (168-229)||(27225-27286)
[»] chr7 (4 HSPs)
chr7 (168-229)||(29059885-29059946)
chr7 (168-228)||(20207578-20207638)
chr7 (168-229)||(31492183-31492244)
chr7 (168-229)||(19477250-19477310)
[»] chr8 (3 HSPs)
chr8 (168-229)||(4125024-4125085)
chr8 (168-229)||(7839253-7839314)
chr8 (168-229)||(19715725-19715787)
[»] chr6 (2 HSPs)
chr6 (168-229)||(12836897-12836958)
chr6 (166-235)||(9536841-9536910)
[»] chr5 (2 HSPs)
chr5 (168-229)||(5123498-5123559)
chr5 (168-229)||(31113414-31113475)
[»] chr4 (4 HSPs)
chr4 (168-229)||(9012350-9012411)
chr4 (168-229)||(31307066-31307127)
chr4 (168-229)||(33529337-33529398)
chr4 (168-229)||(38766169-38766230)
[»] chr3 (4 HSPs)
chr3 (170-227)||(38331210-38331267)
chr3 (170-228)||(25224780-25224838)
chr3 (168-229)||(40294692-40294753)
chr3 (168-229)||(55123177-55123238)
[»] chr1 (1 HSPs)
chr1 (168-205)||(42297442-42297479)


Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 5 - 236
Target Start/End: Complemental strand, 38744045 - 38743811
Alignment:
Q  5 gtagtgatggtgtcactgtgatttgttgtaatgatatattacttcataaaatggcgccactaatctatttttagtgatttgatgagccaacaaaagttga 104  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38744045 gtagtgatggtgtcactatgatttgttgtaatgatatattacttcataaaatggcgccactaatctatttttagtgatttgatgagccaacaaaagttga 38743946  T
Q  105 tgtccatttttataaaaaggatcaaagagaatac-at--tgtgtgtacaccaagtatcctatatgagcgcaactgcggagactaatccctaaagcattgt 201  Q
    |||||||||||||||||||||||||||||| ||| ||  |||||||||||||||||||||  | ||||||||||||||||||||||||||||||||||||    
T  38743945 tgtccatttttataaaaaggatcaaagagagtactattgtgtgtgtacaccaagtatcctccacgagcgcaactgcggagactaatccctaaagcattgt 38743846  T
Q  202 gagatcaaaatgagcggcaagctctccccaaaagt 236  Q
    |||||| ||||||||||||||||||||||||||||    
T  38743845 gagatccaaatgagcggcaagctctccccaaaagt 38743811  T

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Target: scaffold0009 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 27225 - 27286
Alignment:
Q  168 gcgcaactgcggagactaatccctaaagcattgtgagatcaaaatgagcggcaagctctccc 229  Q
    ||||||||||| ||||||||||||  ||||| |||||||| ||||| |||||||||||||||    
T  27225 gcgcaactgcgaagactaatccctcgagcatcgtgagatccaaatgggcggcaagctctccc 27286  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 29059946 - 29059885
Alignment:
Q  168 gcgcaactgcggagactaatccctaaagcattgtgagatcaaaatgagcggcaagctctccc 229  Q
    |||||||||||||||||||||||| |||||||||| || | ||||| |||||| ||||||||    
T  29059946 gcgcaactgcggagactaatccctcaagcattgtgggacccaaatgggcggcaggctctccc 29059885  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 168 - 228
Target Start/End: Complemental strand, 20207638 - 20207578
Alignment:
Q  168 gcgcaactgcggagactaatccctaaagcattgtgagatcaaaatgagcggcaagctctcc 228  Q
    ||||||||||||||||||||||||  ||||||||  |||| ||||| ||||||||||||||    
T  20207638 gcgcaactgcggagactaatccctcgagcattgtaggatccaaatgcgcggcaagctctcc 20207578  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 31492244 - 31492183
Alignment:
Q  168 gcgcaactgcggagactaatccctaaagcattgtgagatcaaaatgagcggcaagctctccc 229  Q
    ||||||||||||||||||||||||  ||||||||| || | ||||| |||||| ||||||||    
T  31492244 gcgcaactgcggagactaatccctcgagcattgtgggacctaaatgggcggcaggctctccc 31492183  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 19477250 - 19477310
Alignment:
Q  168 gcgcaactgcggagactaatccctaaagcattgtgagatcaaaatgagcggcaagctctccc 229  Q
    ||||||||||||||||||||||||  ||||||||| || | |||||  ||||||||||||||    
T  19477250 gcgcaactgcggagactaatccct-cagcattgtgggacccaaatggccggcaagctctccc 19477310  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 4125024 - 4125085
Alignment:
Q  168 gcgcaactgcggagactaatccctaaagcattgtgagatcaaaatgagcggcaagctctccc 229  Q
    ||||||||||||||||||||||||  ||||||||| || | ||||| |||||| ||||||||    
T  4125024 gcgcaactgcggagactaatccctcgagcattgtgggacccaaatgggcggcaggctctccc 4125085  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 7839253 - 7839314
Alignment:
Q  168 gcgcaactgcggagactaatccctaaagcattgtgagatcaaaatgagcggcaagctctccc 229  Q
    ||||||||||||||||||||||||  ||||||||| || | ||||| |||||| ||||||||    
T  7839253 gcgcaactgcggagactaatccctcgagcattgtgggacccaaatgggcggcatgctctccc 7839314  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 19715725 - 19715787
Alignment:
Q  168 gcgcaactgcggagactaat-ccctaaagcattgtgagatcaaaatgagcggcaagctctccc 229  Q
    |||||||||||||||||||| ||||  ||||||||| || | ||||| |||||||||||||||    
T  19715725 gcgcaactgcggagactaatcccctcgagcattgtgggacccaaatgggcggcaagctctccc 19715787  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 12836897 - 12836958
Alignment:
Q  168 gcgcaactgcggagactaatccctaaagcattgtgagatcaaaatgagcggcaagctctccc 229  Q
    ||||||||| |||||||||||||| |||||||||| || | ||||| ||||| |||||||||    
T  12836897 gcgcaactggggagactaatccctcaagcattgtgggacccaaatgggcggcgagctctccc 12836958  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 235
Target Start/End: Complemental strand, 9536910 - 9536841
Alignment:
Q  166 gagcgcaactgcggagactaatccctaaagcattgtgagatcaaaatgagcggcaagctctccccaaaag 235  Q
    ||||||||||||||||||||||||||  |||||||||  ||| |||||  ||| | |||||||| |||||    
T  9536910 gagcgcaactgcggagactaatccctcgagcattgtggaatctaaatggacggtaggctctccctaaaag 9536841  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 5123498 - 5123559
Alignment:
Q  168 gcgcaactgcggagactaatccctaaagcattgtgagatcaaaatgagcggcaagctctccc 229  Q
    ||||||||||||||||||||||||  ||||||||| || | ||||| |||||| ||||||||    
T  5123498 gcgcaactgcggagactaatccctcgagcattgtgggacccaaatgggcggcaggctctccc 5123559  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 31113475 - 31113414
Alignment:
Q  168 gcgcaactgcggagactaatccctaaagcattgtgagatcaaaatgagcggcaagctctccc 229  Q
    ||||||||||||||||||||||||  || |||||| |||| ||||| |||| | ||||||||    
T  31113475 gcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccc 31113414  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 9012411 - 9012350
Alignment:
Q  168 gcgcaactgcggagactaatccctaaagcattgtgagatcaaaatgagcggcaagctctccc 229  Q
    ||||||||||||||||||||||||  ||||||||| || | || || |||||||||||||||    
T  9012411 gcgcaactgcggagactaatccctcgagcattgtgggacccaagtgggcggcaagctctccc 9012350  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 31307066 - 31307127
Alignment:
Q  168 gcgcaactgcggagactaatccctaaagcattgtgagatcaaaatgagcggcaagctctccc 229  Q
    ||||||||||||||||||||||||  ||||||||| || | ||||| |||||| ||||||||    
T  31307066 gcgcaactgcggagactaatccctcgagcattgtgggacccaaatgggcggcaggctctccc 31307127  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 33529398 - 33529337
Alignment:
Q  168 gcgcaactgcggagactaatccctaaagcattgtgagatcaaaatgagcggcaagctctccc 229  Q
    ||||||||||||||||||||||||  || |||||| || | ||||| |||||||||||||||    
T  33529398 gcgcaactgcggagactaatccctccagtattgtgggacccaaatgggcggcaagctctccc 33529337  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 38766230 - 38766169
Alignment:
Q  168 gcgcaactgcggagactaatccctaaagcattgtgagatcaaaatgagcggcaagctctccc 229  Q
    ||||||||||||||||||||||||  |||||||||||| | ||||| ||||||  |||||||    
T  38766230 gcgcaactgcggagactaatccctcgagcattgtgagacccaaatgggcggcagactctccc 38766169  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 227
Target Start/End: Complemental strand, 38331267 - 38331210
Alignment:
Q  170 gcaactgcggagactaatccctaaagcattgtgagatcaaaatgagcggcaagctctc 227  Q
    |||||||||||||||||||||| || ||||||| || | ||||| |||||||||||||    
T  38331267 gcaactgcggagactaatccctcaaacattgtgggacccaaatgggcggcaagctctc 38331210  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 25224838 - 25224780
Alignment:
Q  170 gcaactgcggagactaatccctaaagcattgtgagatcaaaatgagcggcaagctctcc 228  Q
    ||||||||||||||||||||||  ||||||||| || | ||||| |||||||| |||||    
T  25224838 gcaactgcggagactaatcccttgagcattgtgggacctaaatgggcggcaagttctcc 25224780  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 40294753 - 40294692
Alignment:
Q  168 gcgcaactgcggagactaatccctaaagcattgtgagatcaaaatgagcggcaagctctccc 229  Q
    |||||||||||||||||||||| |  || |||||| |||  |||||||||||||||| ||||    
T  40294753 gcgcaactgcggagactaatccttcgagtattgtgggattcaaatgagcggcaagctttccc 40294692  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 55123238 - 55123177
Alignment:
Q  168 gcgcaactgcggagactaatccctaaagcattgtgagatcaaaatgagcggcaagctctccc 229  Q
    ||||||||||| ||||||||||||  |||||||||||| | ||||| |  ||||||||||||    
T  55123238 gcgcaactgcgaagactaatccctcgagcattgtgagacccaaatgggtagcaagctctccc 55123177  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 205
Target Start/End: Original strand, 42297442 - 42297479
Alignment:
Q  168 gcgcaactgcggagactaatccctaaagcattgtgaga 205  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  42297442 gcgcaactgcggagactaatccctcgagcattgtgaga 42297479  T

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