View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20804_high_4 (Length: 619)
Name: NF20804_high_4
Description: NF20804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20804_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 33228741 - 33228418
Alignment:
| Q |
1 |
ggagacaaggttgaaaagggtatctctatcatatttctcattatcattgacatgggtgagataaactttgttaaggatatcaatatcctcaagcttaaag |
100 |
Q |
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| T |
33228741 |
ggagacaaggttgaaaagggtatccctatcatatttcatattatcattgacatgggtgagataaactttgttaaggatttcaatatcctcaagcttaaag |
33228642 |
T |
|
| Q |
101 |
ggattagggagctgagatttctgttgttgggaggtatcattcttttgggtcgtagtgccactgattggtacattataggaggacaatgcagtggacatgg |
200 |
Q |
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| T |
33228641 |
ggattagggagctgagatttctgttgttgggaggtatcattcttttgggtcgtagtgccactgattggtacattat---aggacaatgcagtggacatgg |
33228545 |
T |
|
| Q |
201 |
tgatgatttgtttataaattaataagatttgatataagtaattagcaaattaattatctcaccttgcttaatttctgctaggtgcttcccctatttatac |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
33228544 |
tgatgatttgtttataaattaataagatttgatataagtaattaggaaattaattatctcaccttgcttaatttctgataggtgcttcctctatttatac |
33228445 |
T |
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| Q |
301 |
ttgacatgtttaatagacaaatatttc |
327 |
Q |
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||||||||||||| ||||||||||||| |
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| T |
33228444 |
ttgacatgtttaacagacaaatatttc |
33228418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 357 - 567
Target Start/End: Complemental strand, 33228388 - 33228178
Alignment:
| Q |
357 |
caaggtagcttcttcattagtggtctataaacgtgaaacatgattttatgatgtggttttcataatataccctcacatgactatgtttgttggtatgtga |
456 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33228388 |
caaggtagcttcttcattagtggtctataaacgtgaaacatgattttatgatgtggttttcataatataccctcacatgactatgtttgttggtatgtga |
33228289 |
T |
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| Q |
457 |
aattggatttatattagggatttcattgtcatttaactgaaattatttcacaaacatattctttttgtttttgtgttcaatacgacaaagtacaaactta |
556 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33228288 |
aattggatttatattagggatttcattgtcatttaactgaaattatttcacaaacatattctttttgtttttgtgttcaatacgacaaagtacaaactta |
33228189 |
T |
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| Q |
557 |
tgtacacattc |
567 |
Q |
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||||||||||| |
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| T |
33228188 |
tgtacacattc |
33228178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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