View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20804_high_41 (Length: 239)

Name: NF20804_high_41
Description: NF20804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20804_high_41
NF20804_high_41
[»] chr4 (4 HSPs)
chr4 (20-219)||(40120746-40120958)
chr4 (88-127)||(45038489-45038528)
chr4 (88-127)||(55617663-55617702)
chr4 (88-127)||(55624967-55625006)
[»] chr6 (3 HSPs)
chr6 (88-131)||(3848533-3848576)
chr6 (88-130)||(35050891-35050933)
chr6 (88-125)||(21598761-21598798)
[»] chr5 (3 HSPs)
chr5 (88-131)||(7209833-7209876)
chr5 (88-130)||(10827416-10827458)
chr5 (88-125)||(36760853-36760890)
[»] chr3 (2 HSPs)
chr3 (88-130)||(25848272-25848314)
chr3 (88-125)||(39541484-39541521)
[»] chr1 (1 HSPs)
chr1 (88-130)||(2633614-2633655)


Alignment Details
Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 20 - 219
Target Start/End: Complemental strand, 40120958 - 40120746
Alignment:
Q  20 atgtgggaattcttgcaaaa-tataaaacgtgggaatagaattttcttacgcagtaacatagctataac------------aaattacatcagtgatcct 106  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||             |||||||||| ||||||||    
T  40120958 atgtgggaattcttgcaaaaataaaaaacgtgggaatagaattttcttacgcagtaacatagctataagtattaatacgctaaattacatcggtgatcct 40120859  T
Q  107 ttaagtttgagg-tttgtaataaataaattttaatttttctgttaatcaaacgttacgaaaatgatgatgtggc----aagtgtatgatgtcacatgctt 201  Q
    |||||||||||| ||| ||||||||||||||||||     |||||| ||| ||||||||||||||||||||| |    ||||||||||||| |||| |||    
T  40120858 ttaagtttgaggttttataataaataaattttaat-----tgttaaccaagcgttacgaaaatgatgatgtgacagttaagtgtatgatgtgacatactt 40120764  T
Q  202 tctcatcagacatcttag 219  Q
    |||||| |||||||||||    
T  40120763 tctcattagacatcttag 40120746  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 127
Target Start/End: Complemental strand, 45038528 - 45038489
Alignment:
Q  88 aaattacatcagtgatcctttaagtttgaggtttgtaata 127  Q
    |||||||| || ||||||||||||||||||||||||||||    
T  45038528 aaattacaccaatgatcctttaagtttgaggtttgtaata 45038489  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 127
Target Start/End: Complemental strand, 55617702 - 55617663
Alignment:
Q  88 aaattacatcagtgatcctttaagtttgaggtttgtaata 127  Q
    |||||||||||| |||||||||| ||||||||||||||||    
T  55617702 aaattacatcagggatcctttaaatttgaggtttgtaata 55617663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 127
Target Start/End: Complemental strand, 55625006 - 55624967
Alignment:
Q  88 aaattacatcagtgatcctttaagtttgaggtttgtaata 127  Q
    |||||||||||| |||||||||| ||||||||||||||||    
T  55625006 aaattacatcagggatcctttaaatttgaggtttgtaata 55624967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 131
Target Start/End: Original strand, 3848533 - 3848576
Alignment:
Q  88 aaattacatcagtgatcctttaagtttgaggtttgtaataaata 131  Q
    ||||||||||| || ||||||||||||||||||||||| |||||    
T  3848533 aaattacatcattggtcctttaagtttgaggtttgtaaaaaata 3848576  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 130
Target Start/End: Complemental strand, 35050933 - 35050891
Alignment:
Q  88 aaattacatcagtgatcctttaagtttgaggtttgtaataaat 130  Q
    |||||||||| | || |||||||||||||||||||||||||||    
T  35050933 aaattacatccgggaacctttaagtttgaggtttgtaataaat 35050891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 125
Target Start/End: Complemental strand, 21598798 - 21598761
Alignment:
Q  88 aaattacatcagtgatcctttaagtttgaggtttgtaa 125  Q
    |||||||||||| | |||||||||||||||||||||||    
T  21598798 aaattacatcaggggtcctttaagtttgaggtttgtaa 21598761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 131
Target Start/End: Original strand, 7209833 - 7209876
Alignment:
Q  88 aaattacatcagtgatcctttaagtttgaggtttgtaataaata 131  Q
    |||||||||| | ||||||||| |||||||||||||||||||||    
T  7209833 aaattacatcggggatcctttatgtttgaggtttgtaataaata 7209876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 130
Target Start/End: Complemental strand, 10827458 - 10827416
Alignment:
Q  88 aaattacatcagtgatcctttaagtttgaggtttgtaataaat 130  Q
    |||||||||||| | || |||||||||||||||||||||||||    
T  10827458 aaattacatcagaggtcatttaagtttgaggtttgtaataaat 10827416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 125
Target Start/End: Complemental strand, 36760890 - 36760853
Alignment:
Q  88 aaattacatcagtgatcctttaagtttgaggtttgtaa 125  Q
    |||||| ||||| |||||||||||||||||||||||||    
T  36760890 aaattatatcagggatcctttaagtttgaggtttgtaa 36760853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 130
Target Start/End: Original strand, 25848272 - 25848314
Alignment:
Q  88 aaattacatcagtgatcctttaagtttgaggtttgtaataaat 130  Q
    |||||||| ||| ||||||||||||||||| ||||||||||||    
T  25848272 aaattacaccagagatcctttaagtttgagatttgtaataaat 25848314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 125
Target Start/End: Complemental strand, 39541521 - 39541484
Alignment:
Q  88 aaattacatcagtgatcctttaagtttgaggtttgtaa 125  Q
    |||||||||||| | |||||||||||||||||||||||    
T  39541521 aaattacatcaggggtcctttaagtttgaggtttgtaa 39541484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 130
Target Start/End: Complemental strand, 2633655 - 2633614
Alignment:
Q  88 aaattacatcagtgatcctttaagtttgaggtttgtaataaat 130  Q
    |||||||| ||| ||||||||||||||||||||||||||||||    
T  2633655 aaattacaccag-gatcctttaagtttgaggtttgtaataaat 2633614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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