View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20804_low_1 (Length: 994)
Name: NF20804_low_1
Description: NF20804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20804_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 474; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 299 - 883
Target Start/End: Complemental strand, 53942572 - 53941980
Alignment:
| Q |
299 |
acaagagaattcagtttttagatttcataacaacttgtttctatagtgggacaccttaatgtggtcatgttagagaatgatctctaaccattggaatgat |
398 |
Q |
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| T |
53942572 |
acaagagaattcagtttttagatttcataacaacttgtttctatagtgggacaccttaatgtggtcatggtagagaatgatttctaaccattggaatgat |
53942473 |
T |
|
| Q |
399 |
cgttgtgtgcaagtttgacttatccaatggtgtatcctcactattcacactaaattaatttttcattcaccctttcttcttatttactactacttcctag |
498 |
Q |
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| T |
53942472 |
cgatgtgtgcaagtttgacttatccaatggtgtatcctcactattgacactaaattaatttttcattcaccctttcttcttatttactactacttcctag |
53942373 |
T |
|
| Q |
499 |
tagagtagggtggtactcctgctataattctagtttgtttcttgccggtttttcaaggtatattt---------atgatatcttgctttgctgagnnnnn |
589 |
Q |
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| T |
53942372 |
tagagtagggtggtactcctgctataattctagtttgtttcttgccggtttttcaaggtatattttaggttcagatgatatcttgctt-gctgagttttt |
53942274 |
T |
|
| Q |
590 |
nnnctatctatcatggttcagattatcctgtttgcattaatttgattaatgaccccattgactgttaccatatctatgtggttcttatttaagacataaa |
689 |
Q |
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| T |
53942273 |
tt-ctatctatcatggttcagattatcctgtttgcattaatttgattaatgaccccattgacggttaccatatctatgtggttcttatttaagacataaa |
53942175 |
T |
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| Q |
690 |
atatttgcaccttcaaagtaacattacggtttctcatacacttaaaaaattaatgggaaccaatgtgcagatttcatatcgaaacttgtaacttcttctg |
789 |
Q |
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| T |
53942174 |
acatttgcaccttcaaagtaacattacggtttctcatacacttaaagaattaaggggaaccaatgtgcagatttcatgtcgaaacttgtagcttcttctg |
53942075 |
T |
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| Q |
790 |
atgttggcctccttctt-catgaggcgccacctcctcgtctcgtcatccttctcataagcgatgttgttggcactttcatcctccggttagcttg |
883 |
Q |
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| T |
53942074 |
atgttggcctccttcttccatgaagcgccacctcctcgtctcgtcatccttctcataagcgatgttgttggcactttcatcctccggttagcttg |
53941980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 2 - 269
Target Start/End: Complemental strand, 53942848 - 53942581
Alignment:
| Q |
2 |
tcgtagaaagattcagcgattgtgatcaaagaggtgtcgattttttgggtgcaaatgtttgtggaacaagcataggattggatttgagttctaaggttag |
101 |
Q |
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| T |
53942848 |
tcgtagaaagattcagcgattgtgatcaaagaggtgtcgattttttgggtgcaaatgtttgtggaacaagcataggattggatttgagttctaaggttag |
53942749 |
T |
|
| Q |
102 |
aagttgaacatgttaatgcagaatttggaaatggataagatgaatgaattggaggaaaagaacagagtgaagaaaggattgtcatttttgttgttgtttt |
201 |
Q |
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| T |
53942748 |
aaattgaacatgttaatgcagaatttggaaatggataagatgaatgaattggaggaaaagaacagagtgaagaaaggattgtcatttttgttgttgtgtt |
53942649 |
T |
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| Q |
202 |
cgtggctgcatctgcttcttgttcttgttttcgataagtgtctttgtttctatttggtgaaacaatca |
269 |
Q |
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| T |
53942648 |
cgtggctgcatctgcttcttgttcttgttttcgataagtgtctttgtttctatttggtgaaactatca |
53942581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 916 - 977
Target Start/End: Complemental strand, 53941942 - 53941881
Alignment:
| Q |
916 |
gtttatcattgtaacaaaaaacaaatcagctgcaacggaagaagtagtataaggaggacaat |
977 |
Q |
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| T |
53941942 |
gtttatcattgtaacaaaaaacaaatcagctgcaacggaagaagtagtataaggaggacaat |
53941881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 81; Significance: 1e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 610 - 814
Target Start/End: Complemental strand, 18889083 - 18888884
Alignment:
| Q |
610 |
gattatcctgtttgcattaatttgattaatgaccccattgactgttaccatatctatgtggttcttatttaagacataaaatatttgcaccttcaaagta |
709 |
Q |
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| T |
18889083 |
gattatcttgtttgcattaatttgattaatggctccattgagaggtaccatgtctatgtggcccttattcaatacataaaaaatttgcttcttcaaagta |
18888984 |
T |
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| Q |
710 |
acattacggtttctcatacacttaaaaaattaatgggaaccaatgtgcagatttcatatcgaaacttgtaacttcttctgatgttggcctccttcttcat |
809 |
Q |
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| T |
18888983 |
atatcacggtttctcatacgcttaga-----gatgggaaccaaagtgcagatttcatgatgaaacttggagcttcttctgatgttggcctccttcttcgt |
18888889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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