View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20804_low_11 (Length: 414)
Name: NF20804_low_11
Description: NF20804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20804_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 92 - 398
Target Start/End: Complemental strand, 43474409 - 43474103
Alignment:
| Q |
92 |
tcctcctcaaatatctcatcagaaaaattcggttggtcctggagctccaagacagtcatgtaccaatcaatcaaatatttctctttaaactctagtcgtg |
191 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
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| T |
43474409 |
tcctcctcaaatatctcatcagaaaaatccggttggtcctggagctccaagacagtcatgtaccaatcaatcaagtatttctctttaaactctagtcgcg |
43474310 |
T |
|
| Q |
192 |
agacagttcctttggcaccacaatacttatcattgtcgtgctcatgcaagaattgtgagaatgctaccaatttgtccaaccattctcccttaaaatagcc |
291 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
43474309 |
agacagttcctttggcaccacgatacttatcattgtcgtgctcatgcaagaattgtgagaattctaccaatttgtccaaccattctcccttaaaatagcc |
43474210 |
T |
|
| Q |
292 |
tttgagttttgcaatccaaaaatcaaagcgtagtagacaatcattgtgaatagagacgggattctgtagacgtaaaaggtcgagcaaagagtaaagagac |
391 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
43474209 |
tttgagttttgcaatccaaaaatcaaagcgtagtagacaatcattgtgaatagagacgggattctgtcgacgtaaaaggtcgagcaaagagtaaagagac |
43474110 |
T |
|
| Q |
392 |
aagtatg |
398 |
Q |
| |
|
||||||| |
|
|
| T |
43474109 |
aagtatg |
43474103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 92 - 398
Target Start/End: Original strand, 43565838 - 43566144
Alignment:
| Q |
92 |
tcctcctcaaatatctcatcagaaaaattcggttggtcctggagctccaagacagtcatgtaccaatcaatcaaatatttctctttaaactctagtcgtg |
191 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||||||| |||||||||||| | |||||||||| |||||||||||| ||||||||||||||| | |
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| T |
43565838 |
tcctcctcaaatatctcatcagagaaatttggttggtcctgaagctccaagacactgttgtaccaatccatcaaatatttcaatttaaactctagtcgcg |
43565937 |
T |
|
| Q |
192 |
agacagttcctttggcaccacaatacttatcattgtcgtgctcatgcaagaattgtgagaatgctaccaatttgtccaaccattctcccttaaaatagcc |
291 |
Q |
| |
|
|||||||||||||| || | |||||| ||||||||||||| ||||| ||||||||||||||| ||| || || ||||||||||||||| ||||||| |
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| T |
43565938 |
agacagttcctttgttgccgcgatacttgtcattgtcgtgctgatgcaggaattgtgagaatgcctccagttcatctaaccattctcccttacaatagcc |
43566037 |
T |
|
| Q |
292 |
tttgagttttgcaatccaaaaatcaaagcgtagtagacaatcattgtgaatagagacgggattctgtagacgtaaaaggtcgagcaaagagtaaagagac |
391 |
Q |
| |
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||||||||||||||||||||||||||||| ||| ||||| |||||||| |||||||||||||||| | ||||||||||||| |||||||||||||||||| |
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| T |
43566038 |
tttgagttttgcaatccaaaaatcaaagcatagcagacattcattgtggatagagacgggattctcttgacgtaaaaggtcaagcaaagagtaaagagac |
43566137 |
T |
|
| Q |
392 |
aagtatg |
398 |
Q |
| |
|
||||||| |
|
|
| T |
43566138 |
aagtatg |
43566144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 92 - 398
Target Start/End: Original strand, 43572680 - 43572986
Alignment:
| Q |
92 |
tcctcctcaaatatctcatcagaaaaattcggttggtcctggagctccaagacagtcatgtaccaatcaatcaaatatttctctttaaactctagtcgtg |
191 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| | |
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|
| T |
43572680 |
tcctcctcaaatatctcatcagaaaaattcggtcgatcctggagctccaagacagtgatgtaccaatcaatcaaatatttctgtttaaactctagtcgag |
43572779 |
T |
|
| Q |
192 |
agacagttcctttggcaccacaatacttatcattgtcgtgctcatgcaagaattgtgagaatgctaccaatttgtccaaccattctcccttaaaatagcc |
291 |
Q |
| |
|
|||||||||||||| || |||||||||||||||| |||||||||||||||| ||||||||| ||| || || |||||||||||| |||||||||| |
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|
| T |
43572780 |
agacagttcctttgttgccgcaatacttatcattgttgtgctcatgcaagaatgttgagaatgcctccagttcatctaaccattctcccataaaatagcc |
43572879 |
T |
|
| Q |
292 |
tttgagttttgcaatccaaaaatcaaagcgtagtagacaatcattgtgaatagagacgggattctgtagacgtaaaaggtcgagcaaagagtaaagagac |
391 |
Q |
| |
|
|||||||||| |||| | |||||||| ||| ||||| |||||| | |||||||||||||||||| ||||||||||| ||||||||||||||||||| |
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|
| T |
43572880 |
tttgagttttccaatatagaaatcaaaacgttccagacattcattggggatagagacgggattctgtcgacgtaaaaggctgagcaaagagtaaagagac |
43572979 |
T |
|
| Q |
392 |
aagtatg |
398 |
Q |
| |
|
|||||| |
|
|
| T |
43572980 |
gagtatg |
43572986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 9 - 95
Target Start/End: Complemental strand, 43474537 - 43474451
Alignment:
| Q |
9 |
gagaagaaatgacgaactcaaaagaagctagttcggctctgagctttaaagcatttttaacctccataatctgagcctcaatatcct |
95 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43474537 |
gagaagaaatgtcgaactcaaaagaagttagttcggctctgagctttaaagcatttttaacctccataatctgagcctcaatatcct |
43474451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 9 - 95
Target Start/End: Original strand, 43565710 - 43565796
Alignment:
| Q |
9 |
gagaagaaatgacgaactcaaaagaagctagttcggctctgagctttaaagcatttttaacctccataatctgagcctcaatatcct |
95 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||| |
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|
| T |
43565710 |
gagaagaaatgtcgaactcaaacgaagctagttcggttctgagctttaaagcattgttaacctccataatctgagccttaatatcct |
43565796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 10 - 95
Target Start/End: Original strand, 43572553 - 43572638
Alignment:
| Q |
10 |
agaagaaatgacgaactcaaaagaagctagttcggctctgagctttaaagcatttttaacctccataatctgagcctcaatatcct |
95 |
Q |
| |
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|||||||||| ||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
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|
| T |
43572553 |
agaagaaatgtcgaactcaagagaagttagttcggctctgagctttaaagcagttttaacctccataatctgagcctgaatatcct |
43572638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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