View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20804_low_12 (Length: 413)
Name: NF20804_low_12
Description: NF20804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20804_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 14020665 - 14020708
Alignment:
| Q |
1 |
aagtgttcttttaggacacggatgatggagaactagctggaaca |
44 |
Q |
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| T |
14020665 |
aagtgttcttttaggttacggatgatggagaactagctggaaca |
14020708 |
T |
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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 53
Target Start/End: Original strand, 14044861 - 14044896
Alignment:
| Q |
18 |
acggatgatggagaactagctggaacataactgaat |
53 |
Q |
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| T |
14044861 |
acggatgatggagaactagctggaacataactgaat |
14044896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 58 - 90
Target Start/End: Original strand, 14044927 - 14044959
Alignment:
| Q |
58 |
aaagaaaatcagaacatatatgacattaaatgt |
90 |
Q |
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| T |
14044927 |
aaagaaaatcagaacatatatgacatttaatgt |
14044959 |
T |
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