View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20804_low_16 (Length: 372)
Name: NF20804_low_16
Description: NF20804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20804_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 24 - 233
Target Start/End: Original strand, 2701324 - 2701530
Alignment:
| Q |
24 |
ttctttcttagtataatttacatagtttcttacatattttgaattaagatatattttgaatgagaagcatttgtataatttacaataattatattacaaa |
123 |
Q |
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| T |
2701324 |
ttctttcttagtataatttacatagtttcttacatattttgaattaagatatattttgaatgacaagcatttgtataatttacaataat---attacaaa |
2701420 |
T |
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| Q |
124 |
atccatcttcagtctccacaacaattgtatttaccaaattctacagtcaaatcttaacctttctaaaatttagatctccaaacaaaatttgttggatttt |
223 |
Q |
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| T |
2701421 |
atccatcttcagtctccacaacaattgtatttaccaaattctacagtcaaatcttaacctttctaaaatttagatctccaaacaaaatttgttggatttt |
2701520 |
T |
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| Q |
224 |
aggaaaccaa |
233 |
Q |
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|||||||||| |
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| T |
2701521 |
aggaaaccaa |
2701530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 241 - 362
Target Start/End: Original strand, 2701574 - 2701695
Alignment:
| Q |
241 |
gtcatttttctaatgaccatataacatgactaaaaacatatatcatctttaattattagcagccttgtacattcttcattaacattgaaagtgaggtaaa |
340 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2701574 |
gtcatttttctaatgaccatataacatgactaaacacatatatcatctttaattattagcagccttttacattcttcattaacattgaaagtgaggtaaa |
2701673 |
T |
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| Q |
341 |
attttcatcttcttctcctttg |
362 |
Q |
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|||||||||||||||||||||| |
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| T |
2701674 |
attttcatcttcttctcctttg |
2701695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 280 - 364
Target Start/End: Original strand, 2700495 - 2700579
Alignment:
| Q |
280 |
atatcatctttaattattagcagccttgtacattcttcattaacattgaaagtgaggtaaaattttcatcttcttctcctttgct |
364 |
Q |
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| T |
2700495 |
atatcatctttaattattagcagccttgtacattcttcattaacattgaaagtgaggtaaaattttcatcttcttctcctttgct |
2700579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 127 - 281
Target Start/End: Original strand, 2700282 - 2700437
Alignment:
| Q |
127 |
catcttcagtctccacaacaattgtatttaccaaattctacagtcaaatcttaacctttctaaaatttagatctccaaacaaaatttgttggattttagg |
226 |
Q |
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||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||| | || ||||||| ||||||||| |
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| T |
2700282 |
catcttcagtctccacaacaattgtatttaccaaattttacggtcaaatcttaagctttctaaaatttagatctccagaaaatatttgttagattttagg |
2700381 |
T |
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| Q |
227 |
aaaccaa-nnnnnnngtcatttttctaatgaccatataacatgactaaaaacatat |
281 |
Q |
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| T |
2700382 |
aaaccaattaattttgtcatttttctagtgaccatataacataactgaacacatat |
2700437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 50 - 124
Target Start/End: Original strand, 2698994 - 2699068
Alignment:
| Q |
50 |
ttcttacatattttgaattaagatatattttgaatgagaagcatttgtataatttacaataattatattacaaaa |
124 |
Q |
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|||||| |||||||||||||||| |||||||| |||| ||||||||||||||||||||||| |||||||| |||| |
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| T |
2698994 |
ttcttatatattttgaattaagacatattttgcatgacaagcatttgtataatttacaatagttatattagaaaa |
2699068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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