View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20804_low_18 (Length: 343)
Name: NF20804_low_18
Description: NF20804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20804_low_18 |
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| [»] scaffold0438 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 44919257 - 44919586
Alignment:
| Q |
1 |
acatcctcgtattcatgaaatcgaaaaatcaaatgttgaaataagttttctaaaactacttaacgnnnnnnnacaaactagaactacttaatttatatta |
100 |
Q |
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| T |
44919257 |
acatcctcgtattcatgaaatcgaaaaatcaaatgttgaaataagttttctaaaactacttaacgtttttttacaaactagaactacttaatttatatta |
44919356 |
T |
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| Q |
101 |
catacgacccaaaattctaattataaccggcgcacgaactaataactcatagttcgacaaaccttataccaaaccatcaataagaaaattttaaactaat |
200 |
Q |
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| T |
44919357 |
catacgacccaaaattctaattataaccggcgcacgaaccaatacctcatagttcgacaaaccttataccaaaccattaataagaaaattttaaactaat |
44919456 |
T |
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| Q |
201 |
tttcgattcaaaatcatgtttactgaaatttcgaaaaagtaatctctataatttcaccatttacttgcaaaaagctatcagccccatgtggaagtctcat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
44919457 |
tttcgattcaaaatcatgtttactgaaatttcgaaaaagtaatctctataatttcaccatttacttgcaaaaagctatcagccctatgtggaagtctcat |
44919556 |
T |
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| Q |
301 |
ttgtttccaaactgtgatttattttggtct |
330 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
44919557 |
ttgtttccaaactgtgatttattttggtct |
44919586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 104 - 242
Target Start/End: Complemental strand, 2891805 - 2891664
Alignment:
| Q |
104 |
acgacccaaaattctaattataaccggcgcacgaactaataactcatagttcgacaaaccttat-accaaaccatcaataagaaaattttaaactaa-tt |
201 |
Q |
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| T |
2891805 |
acgacccaaaattctaattgtgaccgacgcatgaactaatacctcatagtttagcaaacctcatgaccaaacgataaataagcaatttttaaaccaactt |
2891706 |
T |
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| Q |
202 |
ttcgattcaaaatcat-gtttactgaaatttcgaaaaagtaa |
242 |
Q |
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| T |
2891705 |
ttcaattcaaaatcatggttaactgaaatttcgaaagagtaa |
2891664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 129 - 243
Target Start/End: Complemental strand, 2886522 - 2886405
Alignment:
| Q |
129 |
ggcgcacgaactaataactcatagttcgacaaacctta-taccaaaccatcaataagaaaattttaaactaa-ttttcgattcaaaatcat-gtttactg |
225 |
Q |
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| T |
2886522 |
ggcgcacgaactaataccttatagttcggcaagcctcattaccaaacaataaataagcaatttctaaactaacttttcgattcagaatcatggtttactg |
2886423 |
T |
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| Q |
226 |
aaatttcgaaaaagtaat |
243 |
Q |
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|||||| |||| |||||| |
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| T |
2886422 |
aaattttgaaagagtaat |
2886405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0438 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0438
Description:
Target: scaffold0438; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 117 - 256
Target Start/End: Original strand, 7336 - 7476
Alignment:
| Q |
117 |
ctaattataaccggcgcacgaactaataactcatagttcgacaaaccttat-accaaaccatcaataagaaaattttaaactaattttcgattcaaaatc |
215 |
Q |
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|||||| | ||||||||||||||||||| ||||||||||| ||| ||| || ||||| || ||||| || ||| || |||| ||||||||||||||| |
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| T |
7336 |
ctaattgtgaccggcgcacgaactaatacctcatagttcggcaagcctgatgaccaacgaattaataaacaattttcaagctaactttcgattcaaaatc |
7435 |
T |
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| Q |
216 |
atgtttactgaaatttcgaaaaagtaatctctataatttca |
256 |
Q |
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| T |
7436 |
ttgtttacttaaatttcgacagagtaacccctatattttca |
7476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 134 - 234
Target Start/End: Complemental strand, 27651668 - 27651567
Alignment:
| Q |
134 |
acgaactaataactcatagttcgacaaaccttat-accaaaccatcaataagaaaattttaaactaattttcgattcaaaatcatgtttactgaaatttc |
232 |
Q |
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||||||||||| || |||||||| ||| ||| || |||||| || ||||| || ||| || |||| |||||||||||||||||||||||||||||||| |
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| T |
27651668 |
acgaactaatagcttatagttcggcaagcctgatgaccaaagaattaataaacaattttcaagctaactttcgattcaaaatcatgtttactgaaatttc |
27651569 |
T |
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| Q |
233 |
ga |
234 |
Q |
| |
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|| |
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| T |
27651568 |
ga |
27651567 |
T |
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