View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20804_low_21 (Length: 304)
Name: NF20804_low_21
Description: NF20804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20804_low_21 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 14 - 285
Target Start/End: Original strand, 36007340 - 36007608
Alignment:
| Q |
14 |
gaatagaacattttgcttgtgatgtgctatatatactgctctatgaaagaaaatactacagcatattcgctttggtttgtacagacaaggttcattatgt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36007340 |
gaatagaacattttgcttgtgatgtgctatatatactgctctatgaaagaaaatactacagcatattcgctttggtttgtacagacaaggttcattatgt |
36007439 |
T |
|
| Q |
114 |
tactattatcaatgaatatcaaacaattaattgacccaaaatttatatatgctaaaactagaagcagagccaggattttggaattggattatgcgctcat |
213 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36007440 |
tactattatcaatgaaaatcaaacaattaattgacccaaaatttatatatgctaaaactagaagcagagccaggattttggaattggattatgcgctcat |
36007539 |
T |
|
| Q |
214 |
ttaactgtgttagaaagaaagcgacattgatgaattaacaatactcaacttaaggctcatttgggtccaaag |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
36007540 |
ttaactgtgttagaaagaaagcgacattgatgaatt---aatactcaacttaaggctcatttgggtccaaag |
36007608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 24 - 180
Target Start/End: Original strand, 36013199 - 36013355
Alignment:
| Q |
24 |
ttttgcttgtgatgtgctatatatactgctctatgaaagaaaatactacagcatattcgctttggtttgtacag-acaaggttcattatgttactattat |
122 |
Q |
| |
|
||||||||||| ||| ||||||||||| | |||||||||| |||||||||| |||||||||||| ||||||| ||| ||| |||||||| | | | |
|
|
| T |
36013199 |
ttttgcttgtgttgttgtatatatactgttatatgaaagaagatactacagcttattcgctttgg-ctgtacagtgcaaagtttgttatgttattgtcaa |
36013297 |
T |
|
| Q |
123 |
caatgaatatcaaacaattaattgacccaaaatttatatatgctaaaactagaagcag |
180 |
Q |
| |
|
||||||||||||||||| |||||||| |||| || | |||||| ||||||||||||| |
|
|
| T |
36013298 |
caatgaatatcaaacaacaaattgacctaaaagttgtttatgctgaaactagaagcag |
36013355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University