View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20804_low_22 (Length: 286)
Name: NF20804_low_22
Description: NF20804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20804_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 21 - 269
Target Start/End: Original strand, 52421786 - 52422034
Alignment:
| Q |
21 |
tttgacagggaaatgacattctttctttggaatggctgtccgatattgtggatgattctcgtgatgagaatattacaatgaaaaaagtggagcaacatcc |
120 |
Q |
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| T |
52421786 |
tttgacagggaaatgacattctttctttggaatggctgtccgatattgtggatgattctcgtgatgagaatattacaatgaaaaaagtggagcaacatcc |
52421885 |
T |
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| Q |
121 |
atcatcatcagtcaacaaggaggattttgtgctccctaaaagcaatagttcacccacttgtgaaaagaccacagtgagacgtacacgctccaagcgtcca |
220 |
Q |
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| T |
52421886 |
atcatcatcagtcaacaaggaggattttgtgctccctaaaagcaatagttcacccacttgtgaaaagaccacagtgagacgtacacgctccaagcgtcca |
52421985 |
T |
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| Q |
221 |
cgtcttgcaaccttcagctcccatcattcaaccatgcaactcatttctt |
269 |
Q |
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| T |
52421986 |
cgtcttgcaaccttcagctcccatcattcaaccatgcaactcatttctt |
52422034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 129; Significance: 8e-67; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 32 - 268
Target Start/End: Original strand, 14150370 - 14150606
Alignment:
| Q |
32 |
aatgacattctttctttggaatggctgtccgatattgtggatgattctcgtgatgagaatattacaatgaaaaaagtggagcaacatccatcatcatcag |
131 |
Q |
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| T |
14150370 |
aatgacattcttcaattggattggttgtccaatattgtggatgattcttgtgatgagaatctcacagtgaaaaaagtggagcaacaaccatcatcatcgg |
14150469 |
T |
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| Q |
132 |
tcaacaaggaggattttgtgctccctaaaagcaatagttcacccacttgtgaaaagaccacagtgagacgtacacgctccaagcgtccacgtcttgcaac |
231 |
Q |
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| T |
14150470 |
tcaacaaggaggattttgtgctccttgaaagcagtagttcacctgctcatgaaaagaccacaatgagacgtacacgcaccaagcgtccacatcttgcaac |
14150569 |
T |
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| Q |
232 |
cttcagctcccatcattcaaccatgcaactcatttct |
268 |
Q |
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| T |
14150570 |
cttcagcccacctcgttcaaccatgcaacccatttct |
14150606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 57 - 268
Target Start/End: Complemental strand, 14151279 - 14151070
Alignment:
| Q |
57 |
tgtccgatattgtggatgattctcgtgatgagaatattacaatgaaaaaagtggagcaacatccatcatcatcagtcaacaaggaggattttgtgctccc |
156 |
Q |
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| T |
14151279 |
tgtccaatattgtggatgattcttgagatgagaatctcactgtgaaaaaagtggagcaacaaccatcatcatcagtctacaaggaggattttgtgctcca |
14151180 |
T |
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| Q |
157 |
taaaagcaatagttcacccacttgtgaaaagaccacagtgagacgtacacgctccaagcgtccacgtcttgcaaccttcagctcccatcattcaaccatg |
256 |
Q |
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| T |
14151179 |
tgaaagcagtagttcacccactcataaaaagaccacaatgatacgtacacgctccaagcgtccacgtcctgcaagcttcag--cccctcgttcaaccatg |
14151082 |
T |
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| Q |
257 |
caactcatttct |
268 |
Q |
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| T |
14151081 |
caactcatttct |
14151070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 27 - 268
Target Start/End: Complemental strand, 24482559 - 24482321
Alignment:
| Q |
27 |
agggaaatgacattctttctttggaatggctgtccgatattgtggatgattctcgtgatgagaatattacaatgaaaaaagtggagcaacatccatcatc |
126 |
Q |
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|||| |||||||||||| ||||| ||||||||| |||||||| |||||||| |||||||| || | ||| ||||||||||| ||||||| |||||||| |
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| T |
24482559 |
agggtaatgacattcttcaattggattggctgtccaatattgtg-atgattcttgtgatgagtatctcacagtgaaaaaagtgaagcaacaaccatcatc |
24482461 |
T |
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| Q |
127 |
atcagtcaacaaggaggattttgtgctccctaaaagcaatagttcacccacttgtgaaaagaccacagtgagacgtacacgctccaagcgtccacgtctt |
226 |
Q |
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| T |
24482460 |
atcggtcaacaaggaggatttggtgctccttgaaagcagtagttcacccactggtggaaagactacaatgagacgtacacactccaagcgtccatgtcat |
24482361 |
T |
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| Q |
227 |
gcaaccttcagctcccatcattcaaccatgcaactcatttct |
268 |
Q |
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| T |
24482360 |
g-aacctgcagcttcc-tcgttcaaccatgcaactcatttct |
24482321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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