View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20804_low_25 (Length: 270)
Name: NF20804_low_25
Description: NF20804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20804_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 44996980 - 44997235
Alignment:
| Q |
1 |
tccaaccaagtttactgcataaaaatataggtgtgcaatggaaatattacattagaccaaaatccatataattgtcagttgtcacatatttatacaagta |
100 |
Q |
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| T |
44996980 |
tccaaccaagtttactgcataaaaatataggtgtgcaatggaaatattacattagaccaaaatccatataactgtcagttgtcacatatttatacaagta |
44997079 |
T |
|
| Q |
101 |
tagaatagcaacttaattattaccgtttgtagagcatgccaaaaactgttcttctaactggattgagctcttccactgctttcttgatacctgaaacata |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44997080 |
tagaatagcaacttaatta---ccgtttgtagagcatgccaaaaactgttcttctaactggattgagctcttccactgctttcttgatacctgaaacata |
44997176 |
T |
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| Q |
201 |
taatcttgaatgagttatgtactaaattgtaatgaaataaataatttttgtgcagaatt |
259 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44997177 |
taatcttgaatgagttatgtactaaattgtaatgaaataaataatttttgtgcagaatt |
44997235 |
T |
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Back To:
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Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 127 - 198
Target Start/End: Complemental strand, 38767342 - 38767271
Alignment:
| Q |
127 |
ttgtagagcatgccaaaaactgttcttctaactggattgagctcttccactgctttcttgatacctgaaaca |
198 |
Q |
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|||||||||||||||||||||||||| || |||||||| || | | |||||||||||||||||||| ||||| |
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| T |
38767342 |
ttgtagagcatgccaaaaactgttctcctcactggatttagttgtgccactgctttcttgatacctaaaaca |
38767271 |
T |
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