View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20804_low_27 (Length: 268)
Name: NF20804_low_27
Description: NF20804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20804_low_27 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 48418471 - 48418212
Alignment:
| Q |
1 |
ccattcacccacattgcttgtcaaaggtgtgtgaattctcagacagttcgactttgtttggataaagagcttaattaagtgtttatatataagttatttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48418471 |
ccattcacccacattgcttgtcaaaggtgtgtgaattctcagacagttcaactttgtttggataaagagcttaattaagtgtttatatataagttatttt |
48418372 |
T |
|
| Q |
101 |
gatagcaaa-gatgcattaaaatcacactattttcatagcagccctgtagttattttctgttaacatgtttgtgaaataacagaattttctgaagcagtg |
199 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48418371 |
gatagcaaaagatgcattaaaatcacactattttcatagcagccctgtagttattttctgttaacatgtttgtgaaataacagaattttctgaagcagtg |
48418272 |
T |
|
| Q |
200 |
ataattgattttaatacgcagatatacacaagttgtaatgatggatttgttaggatgatg |
259 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48418271 |
ataattgattttaatacgcagatatacacaagttgtaatgatggatttgttaggatgatg |
48418212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 100
Target Start/End: Original strand, 19535457 - 19535502
Alignment:
| Q |
55 |
tgtttggataaagagcttaattaagtgtttatatataagttatttt |
100 |
Q |
| |
|
|||||||||||| ||||||||||||| |||| ||||||||||||| |
|
|
| T |
19535457 |
tgtttggataaacggcttaattaagtgcttatgtataagttatttt |
19535502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 100
Target Start/End: Original strand, 24967929 - 24967974
Alignment:
| Q |
55 |
tgtttggataaagagcttaattaagtgtttatatataagttatttt |
100 |
Q |
| |
|
|||||||||||| ||||||||||||| |||| ||||||||||||| |
|
|
| T |
24967929 |
tgtttggataaacggcttaattaagtgcttatgtataagttatttt |
24967974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 86
Target Start/End: Original strand, 5133651 - 5133683
Alignment:
| Q |
54 |
ttgtttggataaagagcttaattaagtgtttat |
86 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |
|
|
| T |
5133651 |
ttgtttggataaacagcttaattaagtgtttat |
5133683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University