View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20804_low_3 (Length: 623)
Name: NF20804_low_3
Description: NF20804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20804_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 496; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 18 - 614
Target Start/End: Complemental strand, 45382866 - 45382278
Alignment:
| Q |
18 |
aattctcatcttcatagagctggaaattgggacaatatttggaggattaaggtacctccgaaagtgaagaatttaatttggagagtgtgccggaattgtc |
117 |
Q |
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| T |
45382866 |
aattctcatcttcatagagctggaaattgggacaatatttggaggattaaggtacctccgaaagtgaagaatttaatttggag--tgtgccggaattgtc |
45382769 |
T |
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| Q |
118 |
taccgacacgagcaagattgttagataagggagttcattgccctttttgtgtgctttatgcgatgagagttatgaggatacactacatgtattgtttgac |
217 |
Q |
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| T |
45382768 |
taccgacacgagcaagattattagataaaggagttcattgccctttttg-----------cgatgagagttatgaggatacactacatgtattgtttgac |
45382680 |
T |
|
| Q |
218 |
tgtcataaagcaaggaatgtgtggagggagagctgtttgatgagtaaaattgatttggcaatgcataacaaca---cagcagttgagatcatctttgctt |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
45382679 |
tgtcataaagcaaggaatgtgtggagggagagctgtttgatgagtaaaattgatttggcaatgcataacaacaacacagcagttgagatcatctttgctt |
45382580 |
T |
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| Q |
315 |
tactgcaggatctgccacaagatcaagctcagattttctgtacgatcttgtagagcttatggaagagtcgtaagatgcgtgtttggcaaaacacaacaga |
414 |
Q |
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| T |
45382579 |
tactgcaggatctgccacaagatcaagctcagattttctgtacgatcttgtagagcttatggaagagtcgtaacatgcgtgtttggcaaaacacaacaga |
45382480 |
T |
|
| Q |
415 |
aacttgccaaactgttgtcgagcgtgcgcggcatctgctgtttggttg--gagtagcaaatggcagcaaacagatgtgtggaacgacaagaaatgctgct |
512 |
Q |
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| T |
45382479 |
aacttgccaaactgttgtcgagcgtgtgcggcatctgctgttcggttggagagtagcaaatggcagcaaacagatgtatggaacgacaagaaatgctgct |
45382380 |
T |
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| Q |
513 |
ggtttgcaaactgttgaacatgtagaagctgcaggtacaattccaatgctgccagttcaggtgtcgtggcagaaaccagcaagtggcaggctgaagtata |
612 |
Q |
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| T |
45382379 |
ggtttgcaaactgttgaacatgtagcagctgcaggtacaattccaatgctgccagttcaggtgtcgtggcagaaaccagcaagtggcaggctgaagtgta |
45382280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 53 - 106
Target Start/End: Original strand, 13925135 - 13925188
Alignment:
| Q |
53 |
tatttggaggattaaggtacctccgaaagtgaagaatttaatttggagagtgtg |
106 |
Q |
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| T |
13925135 |
tatttggaggtttaaggtgcctccgaaagtgaagaatctgatttggatagtgtg |
13925188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 45 - 151
Target Start/End: Complemental strand, 897709 - 897603
Alignment:
| Q |
45 |
tgggacaatatttggaggattaaggtacctccgaaagtgaagaatttaatttggagagtgtgccggaattgtctaccgacacgagcaagattgttagata |
144 |
Q |
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| T |
897709 |
tgggacaatatttggagactcaaagttccgtcgaaagtaaagaatttaatatggaggatttgtctggactgtttaccgactcgagcaaggttgttagata |
897610 |
T |
|
| Q |
145 |
agggagt |
151 |
Q |
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||||||| |
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| T |
897609 |
agggagt |
897603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 53 - 106
Target Start/End: Original strand, 12204271 - 12204324
Alignment:
| Q |
53 |
tatttggaggattaaggtacctccgaaagtgaagaatttaatttggagagtgtg |
106 |
Q |
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| T |
12204271 |
tatttggaggtttaaggtgcctccgaaagtgaagaatctgatttggatagtgtg |
12204324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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