View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20804_low_34 (Length: 250)

Name: NF20804_low_34
Description: NF20804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20804_low_34
NF20804_low_34
[»] chr6 (5 HSPs)
chr6 (13-248)||(31262222-31262457)
chr6 (115-237)||(1126169-1126289)
chr6 (181-249)||(5738512-5738578)
chr6 (184-249)||(11410379-11410442)
chr6 (183-250)||(28848473-28848538)
[»] chr2 (9 HSPs)
chr2 (115-249)||(38005611-38005743)
chr2 (115-208)||(30275124-30275217)
chr2 (165-249)||(4577447-4577529)
chr2 (184-249)||(29435365-29435428)
chr2 (184-250)||(15704411-15704475)
chr2 (184-250)||(15719665-15719729)
chr2 (208-249)||(1503872-1503912)
chr2 (208-249)||(1507076-1507116)
chr2 (115-249)||(38070224-38070354)
[»] chr4 (9 HSPs)
chr4 (115-249)||(19864914-19865046)
chr4 (115-249)||(19859950-19860082)
chr4 (191-249)||(5670200-5670256)
chr4 (191-249)||(5672519-5672575)
chr4 (182-248)||(5681058-5681122)
chr4 (208-249)||(11703026-11703067)
chr4 (182-249)||(27013892-27013957)
chr4 (192-249)||(49270362-49270418)
chr4 (208-248)||(33400761-33400800)
[»] chr5 (6 HSPs)
chr5 (77-131)||(40885369-40885423)
chr5 (180-249)||(28441562-28441629)
chr5 (181-249)||(22937365-22937431)
chr5 (177-249)||(21333109-21333179)
chr5 (177-249)||(21336125-21336195)
chr5 (208-249)||(32837674-32837715)
[»] chr8 (4 HSPs)
chr8 (177-249)||(45155698-45155768)
chr8 (177-249)||(5963861-5963931)
chr8 (184-250)||(18696367-18696431)
chr8 (184-249)||(25591901-25591964)
[»] chr1 (4 HSPs)
chr1 (177-249)||(1950882-1950952)
chr1 (184-249)||(49715985-49716048)
chr1 (184-249)||(49719468-49719531)
chr1 (177-249)||(37641472-37641542)
[»] scaffold0214 (3 HSPs)
scaffold0214 (165-249)||(19653-19735)
scaffold0214 (177-249)||(13215-13285)
scaffold0214 (177-249)||(27231-27301)
[»] chr7 (5 HSPs)
chr7 (181-249)||(10431933-10431999)
chr7 (177-249)||(26557111-26557182)
chr7 (177-247)||(8276614-8276682)
chr7 (177-249)||(11825799-11825869)
chr7 (177-249)||(8397464-8397533)
[»] chr3 (9 HSPs)
chr3 (177-250)||(10884568-10884639)
chr3 (177-249)||(10107012-10107082)
chr3 (179-249)||(2280057-2280125)
chr3 (211-249)||(26551234-26551272)
chr3 (184-249)||(30158480-30158543)
chr3 (208-249)||(17532048-17532089)
chr3 (208-249)||(55032265-55032306)
chr3 (217-249)||(25888853-25888885)
chr3 (193-249)||(42354849-42354904)
[»] scaffold0381 (1 HSPs)
scaffold0381 (181-249)||(5827-5893)
[»] scaffold0062 (2 HSPs)
scaffold0062 (184-250)||(53323-53387)
scaffold0062 (184-250)||(68222-68286)
[»] scaffold0035 (1 HSPs)
scaffold0035 (181-249)||(62145-62211)


Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 13 - 248
Target Start/End: Original strand, 31262222 - 31262457
Alignment:
Q  13 aatataaaaggagagcattcattcacgttttagagagccgaacagtacatgattacgattggacgattttggaaataaagaggattcattcacgcatggc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  31262222 aatataaaaggagagcattcattcacgttttagagagccgaacagtacatgattacgattggacgattttggaaacaaagaggattcattcacgcatggc 31262321  T
Q  113 tagaggcacatggatttagagaaacaacatcaacagtagcgcaaagaagataaattgaagagtgaagccggcaacgatggaactctattggtttatattt 212  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31262322 tagaggcacatggatttagagaaacaacatcaacaatagcgcaaagaagataaattgaagagtgaagccggcaacgatggaactctattggtttatattt 31262421  T
Q  213 tctctactatgttgtttatttctttaatcatgtcta 248  Q
    ||||||||||||||||||||||||||||||| ||||    
T  31262422 tctctactatgttgtttatttctttaatcatatcta 31262457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 115 - 237
Target Start/End: Complemental strand, 1126289 - 1126169
Alignment:
Q  115 gaggcacatggatttagagaaacaacatcaacagtagcgcaaagaagataaattgaagagtgaagccggcaacgatggaactctattggtttatattttc 214  Q
    ||||||||| | | |||| ||||||||||||||||||| | | ||||| ||||||| |||| ||||||||||||| |||||||||| ||||  |||| |     
T  1126289 gaggcacatagttatagaaaaacaacatcaacagtagcacgaggaagagaaattgaggagtaaagccggcaacgacggaactctatcggtt--tattgtt 1126192  T
Q  215 tctactatgttgtttatttcttt 237  Q
    | |||||||||||||||| ||||    
T  1126191 tttactatgttgtttattccttt 1126169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 181 - 249
Target Start/End: Complemental strand, 5738578 - 5738512
Alignment:
Q  181 cggcaacgatggaactctattggtttatattttctctactatgttgtttatttctttaatcatgtctag 249  Q
    ||||||||| |||||||||| |||||||  ||||| ||||||||||||||||  |||||||||||||||    
T  5738578 cggcaacgacggaactctatcggtttat--tttctttactatgttgtttattattttaatcatgtctag 5738512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 184 - 249
Target Start/End: Original strand, 11410379 - 11410442
Alignment:
Q  184 caacgatggaactctattggtttatattttctctactatgttgtttatttctttaatcatgtctag 249  Q
    |||||| |||||||||| |||||||  ||||| ||||||||||||||||| ||| |||||||||||    
T  11410379 caacgacggaactctatcggtttat--tttctttactatgttgtttatttatttgatcatgtctag 11410442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 250
Target Start/End: Original strand, 28848473 - 28848538
Alignment:
Q  183 gcaacgatggaactctattggtttatattttctctactatgttgtttatttctttaatcatgtctagt 250  Q
    ||||||||||||||| || | |||||  ||||| ||||||||||||||| | ||| ||||||||||||    
T  28848473 gcaacgatggaactccatcgatttat--tttctttactatgttgtttatgtatttgatcatgtctagt 28848538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 115 - 249
Target Start/End: Complemental strand, 38005743 - 38005611
Alignment:
Q  115 gaggcacatggatttagagaaacaacatcaacagtagcgcaaagaagataaattgaagagtgaagccggcaacgatggaactctattggtttatattttc 214  Q
    ||||||||||| | |||| ||||||||||||||||||| | | ||||| ||||||| |||| ||||||||||||| |||||||||| ||||  |||||||    
T  38005743 gaggcacatggttatagaaaaacaacatcaacagtagcacgaggaagagaaattgaggagtaaagccggcaacgacggaactctatcggtt--tattttc 38005646  T
Q  215 tctactatgttgtttatttctttaatcatgtctag 249  Q
    | |||||||||||||||| ||||||  ||||||||    
T  38005645 tttactatgttgtttattcctttaactatgtctag 38005611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 115 - 208
Target Start/End: Complemental strand, 30275217 - 30275124
Alignment:
Q  115 gaggcacatggatttagagaaacaacatcaacagtagcgcaaagaagataaattgaagagtgaagccggcaacgatggaactctattggtttat 208  Q
    ||||||||||| | |||| ||||||||||||||||||| | | ||||| ||||||| |||| ||| ||||||||| |||||||||| |||||||    
T  30275217 gaggcacatggttatagaaaaacaacatcaacagtagcacgaggaagagaaattgaggagtaaagacggcaacgacggaactctatcggtttat 30275124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 165 - 249
Target Start/End: Original strand, 4577447 - 4577529
Alignment:
Q  165 aattgaagagtgaagccggcaacgatggaactctattggtttatattttctctactatgttgtttatttctttaatcatgtctag 249  Q
    |||||| |||| ||||||||||||| | | |||||| | |||||  ||||| |||||||||||||||||||||||| ||||||||    
T  4577447 aattgaggagtaaagccggcaacgacgaagctctatcgatttat--tttctttactatgttgtttatttctttaattatgtctag 4577529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 184 - 249
Target Start/End: Original strand, 29435365 - 29435428
Alignment:
Q  184 caacgatggaactctattggtttatattttctctactatgttgtttatttctttaatcatgtctag 249  Q
    |||||| |||||||||| |||||||  ||||| ||||||||||||||||| ||| |||||||||||    
T  29435365 caacgacggaactctatcggtttat--tttctttactatgttgtttatttatttgatcatgtctag 29435428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 250
Target Start/End: Complemental strand, 15704475 - 15704411
Alignment:
Q  184 caacgatggaactctattggtttatattttctctactatgttgtttatttctttaatcatgtctagt 250  Q
    |||||| | |||||||| |||||||  ||||| ||||||||||||||||| ||| ||||||||||||    
T  15704475 caacgacgaaactctatcggtttat--tttctttactatgttgtttatttatttgatcatgtctagt 15704411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 250
Target Start/End: Complemental strand, 15719729 - 15719665
Alignment:
Q  184 caacgatggaactctattggtttatattttctctactatgttgtttatttctttaatcatgtctagt 250  Q
    |||||| | |||||||| |||||||  ||||| ||||||||||||||||| ||| ||||||||||||    
T  15719729 caacgacgaaactctatcggtttat--tttctttactatgttgtttatttatttgatcatgtctagt 15719665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 208 - 249
Target Start/End: Complemental strand, 1503912 - 1503872
Alignment:
Q  208 tattttctctactatgttgtttatttctttaatcatgtctag 249  Q
    |||||||| ||||||||||||||||| |||||||||||||||    
T  1503912 tattttct-tactatgttgtttatttatttaatcatgtctag 1503872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 208 - 249
Target Start/End: Complemental strand, 1507116 - 1507076
Alignment:
Q  208 tattttctctactatgttgtttatttctttaatcatgtctag 249  Q
    |||||||| ||||||||||||||||| |||||||||||||||    
T  1507116 tattttct-tactatgttgtttatttatttaatcatgtctag 1507076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 249
Target Start/End: Original strand, 38070224 - 38070354
Alignment:
Q  115 gaggcacatggatttagagaaacaacatcaacagtagcgcaaagaagataaattgaagagtgaagccggcaacgatggaactctattggtttatattttc 214  Q
    ||||||||||||| | || |||||||||||||| ||||| |  ||| | ||||||| |||| |||||  |||||||||||||| || ||   || ||||     
T  38070224 gaggcacatggatatggaaaaacaacatcaacaatagcg-attgaaaagaaattgaggagtaaagcccacaacgatggaactccatcgg---attttttt 38070319  T
Q  215 tctactatgttgtttatttctttaatcatgtctag 249  Q
    | ||| |||||||||||| |||| ||||| |||||    
T  38070320 tttacgatgttgtttattcctttgatcatatctag 38070354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 115 - 249
Target Start/End: Complemental strand, 19865046 - 19864914
Alignment:
Q  115 gaggcacatggatttagagaaacaacatcaacagtagcgcaaagaagataaattgaagagtgaagccggcaacgatggaactctattggtttatattttc 214  Q
    ||||||||||| | |||| ||||||||||||||||||| | | ||||| ||||| | |||| ||||| ||||||| |||||||||| ||||  |||||||    
T  19865046 gaggcacatggttatagaaaaacaacatcaacagtagcacgaggaagagaaattaaggagtaaagccagcaacgacggaactctatcggtt--tattttc 19864949  T
Q  215 tctactatgttgtttatttctttaatcatgtctag 249  Q
    | |||||| ||||||||| ||||||  ||||||||    
T  19864948 tttactatcttgtttattcctttaactatgtctag 19864914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 115 - 249
Target Start/End: Complemental strand, 19860082 - 19859950
Alignment:
Q  115 gaggcacatggatttagagaaacaacatcaacagtagcgcaaagaagataaattgaagagtgaagccggcaacgatggaactctattggtttatattttc 214  Q
    ||||||| ||| | |||| ||||||||||||||||||| | | ||||| ||||||| |||| ||||||||||||| ||||||  || ||||  |||||||    
T  19860082 gaggcacgtggttatagaaaaacaacatcaacagtagcacgaggaagagaaattgaggagtaaagccggcaacgacggaacttcatcggtt--tattttc 19859985  T
Q  215 tctactatgttgtttatttctttaatcatgtctag 249  Q
    | |||||| ||||||| | ||||||  ||||||||    
T  19859984 tttactatattgtttagtcctttaactatgtctag 19859950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 191 - 249
Target Start/End: Original strand, 5670200 - 5670256
Alignment:
Q  191 ggaactctattggtttatattttctctactatgttgtttatttctttaatcatgtctag 249  Q
    |||||||||| |||||||  ||||| | |||||||||||||||||||||||||||||||    
T  5670200 ggaactctatcggtttat--tttctttgctatgttgtttatttctttaatcatgtctag 5670256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 191 - 249
Target Start/End: Original strand, 5672519 - 5672575
Alignment:
Q  191 ggaactctattggtttatattttctctactatgttgtttatttctttaatcatgtctag 249  Q
    |||||||||| |||||||  ||||| | |||||||||||||||||||||||||||||||    
T  5672519 ggaactctatcggtttat--tttctttgctatgttgtttatttctttaatcatgtctag 5672575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 248
Target Start/End: Original strand, 5681058 - 5681122
Alignment:
Q  182 ggcaacgatggaactctattggtttatattttctctactatgttgtttatttctttaatcatgtcta 248  Q
    |||||||| |||||||||| |||||||  ||||| |||||| ||||||||||||||| |||||||||    
T  5681058 ggcaacgacggaactctatcggtttat--tttctttactatattgtttatttctttattcatgtcta 5681122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 208 - 249
Target Start/End: Complemental strand, 11703067 - 11703026
Alignment:
Q  208 tattttctctactatgttgtttatttctttaatcatgtctag 249  Q
    |||||||| ||||||||||||||||| |||||||||||||||    
T  11703067 tattttctttactatgttgtttatttatttaatcatgtctag 11703026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 249
Target Start/End: Original strand, 27013892 - 27013957
Alignment:
Q  182 ggcaacgatggaactctattggtttatattttctctactatgttgtttatttctttaatcatgtctag 249  Q
    |||||||| |||||||||| | |||||  ||||| ||||||||||||||||  |||||||||||||||    
T  27013892 ggcaacgacggaactctatcgatttat--tttctttactatgttgtttattattttaatcatgtctag 27013957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 249
Target Start/End: Original strand, 49270362 - 49270418
Alignment:
Q  192 gaactctattggtttatattttctctactatgttgtttatttctttaatcatgtctag 249  Q
    ||||||||||||||||| |||| | |||||| |||||||||  |||||||||||||||    
T  49270362 gaactctattggtttatttttttt-tactatattgtttattattttaatcatgtctag 49270418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 248
Target Start/End: Complemental strand, 33400800 - 33400761
Alignment:
Q  208 tattttctctactatgttgtttatttctttaatcatgtcta 248  Q
    |||||||| |||||||||||||| |||||||||||||||||    
T  33400800 tattttctttactatgttgttta-ttctttaatcatgtcta 33400761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 77 - 131
Target Start/End: Complemental strand, 40885423 - 40885369
Alignment:
Q  77 gattttggaaataaagaggattcattcacgcatggctagaggcacatggatttag 131  Q
    |||||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  40885423 gattttagaaagaaagaggattcattcacgcatggctagaggcacatggatttag 40885369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 249
Target Start/End: Complemental strand, 28441629 - 28441562
Alignment:
Q  180 ccggcaacgatggaactctattggtttatattttctctactatgttgtttatttctttaatcatgtctag 249  Q
    |||||||||| |||||||||| |||||||  ||||| ||||| |||||||||||||||| ||||||||||    
T  28441629 ccggcaacgacggaactctatcggtttat--tttctttactacgttgtttatttctttattcatgtctag 28441562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 181 - 249
Target Start/End: Complemental strand, 22937431 - 22937365
Alignment:
Q  181 cggcaacgatggaactctattggtttatattttctctactatgttgtttatttctttaatcatgtctag 249  Q
    ||||||||| |||||||||| |||||||  ||||| ||||||||||||||||  |||||||||||||||    
T  22937431 cggcaacgacggaactctatcggtttat--tttctttactatgttgtttattattttaatcatgtctag 22937365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 249
Target Start/End: Complemental strand, 21333179 - 21333109
Alignment:
Q  177 aagccggcaacgatggaactctattggtttatattttctctactatgttgtttatttctttaatcatgtctag 249  Q
    ||||||||| ||| |||||||||| |||||||  ||||| |||||||||||||||| |||| || ||||||||    
T  21333179 aagccggcagcgacggaactctatcggtttat--tttctttactatgttgtttattccttttattatgtctag 21333109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 249
Target Start/End: Complemental strand, 21336195 - 21336125
Alignment:
Q  177 aagccggcaacgatggaactctattggtttatattttctctactatgttgtttatttctttaatcatgtctag 249  Q
    ||||||||| ||| |||||||||| |||||||  ||||| |||||||||||||||| |||| || ||||||||    
T  21336195 aagccggcagcgacggaactctatcggtttat--tttctttactatgttgtttattccttttattatgtctag 21336125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 208 - 249
Target Start/End: Original strand, 32837674 - 32837715
Alignment:
Q  208 tattttctctactatgttgtttatttctttaatcatgtctag 249  Q
    |||||||| ||||||||||||||||||||| |||||||||||    
T  32837674 tattttctttactatgttgtttatttcttttatcatgtctag 32837715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 177 - 249
Target Start/End: Complemental strand, 45155768 - 45155698
Alignment:
Q  177 aagccggcaacgatggaactctattggtttatattttctctactatgttgtttatttctttaatcatgtctag 249  Q
    ||||||||||||| ||||||||||  ||||||  ||||| |||||||||||||||||||||||||||||||||    
T  45155768 aagccggcaacgacggaactctatatgtttat--tttctttactatgttgtttatttctttaatcatgtctag 45155698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 249
Target Start/End: Original strand, 5963861 - 5963931
Alignment:
Q  177 aagccggcaacgatggaactctattggtttatattttctctactatgttgtttatttctttaatcatgtctag 249  Q
    ||||||||||||| |||||||||| ||||  |||||||| || |||||||||||||  ||| |||||||||||    
T  5963861 aagccggcaacgacggaactctatcggtt--tattttctttattatgttgtttattcgtttgatcatgtctag 5963931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 250
Target Start/End: Complemental strand, 18696431 - 18696367
Alignment:
Q  184 caacgatggaactctattggtttatattttctctactatgttgtttatttctttaatcatgtctagt 250  Q
    |||||| | |||||||| |||||||  ||||| ||||||||||||||||| ||| ||||||||||||    
T  18696431 caacgacgaaactctatcggtttat--tttctttactatgttgtttatttatttgatcatgtctagt 18696367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 249
Target Start/End: Complemental strand, 25591964 - 25591901
Alignment:
Q  184 caacgatggaactctattggtttatattttctctactatgttgtttatttctttaatcatgtctag 249  Q
    |||||| | |||||||| |||||||  ||||| ||||||||||||||| | |||||||||||||||    
T  25591964 caacgacgaaactctatcggtttat--tttctttactatgttgtttatgtatttaatcatgtctag 25591901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 177 - 249
Target Start/End: Complemental strand, 1950952 - 1950882
Alignment:
Q  177 aagccggcaacgatggaactctattggtttatattttctctactatgttgtttatttctttaatcatgtctag 249  Q
    ||||||||||||| |||||||||||||||  |||||||| |||||||||||||| |||||| || ||||||||    
T  1950952 aagccggcaacgacggaactctattggtt--tattttctttactatgttgtttaattctttgattatgtctag 1950882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 184 - 249
Target Start/End: Original strand, 49715985 - 49716048
Alignment:
Q  184 caacgatggaactctattggtttatattttctctactatgttgtttatttctttaatcatgtctag 249  Q
    |||||| |||||||||| |||||||  ||||| ||||||||||||||||| ||| |||||||||||    
T  49715985 caacgacggaactctatcggtttat--tttctttactatgttgtttatttatttgatcatgtctag 49716048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 184 - 249
Target Start/End: Original strand, 49719468 - 49719531
Alignment:
Q  184 caacgatggaactctattggtttatattttctctactatgttgtttatttctttaatcatgtctag 249  Q
    |||||| |||||||||| |||||||  ||||| ||||||||||||||||| ||| |||||||||||    
T  49719468 caacgacggaactctatcggtttat--tttctttactatgttgtttatttatttgatcatgtctag 49719531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 249
Target Start/End: Original strand, 37641472 - 37641542
Alignment:
Q  177 aagccggcaacgatggaactctattggtttatattttctctactatgttgtttatttctttaatcatgtctag 249  Q
    |||||||||||||  ||||||||| |||||||  ||||| || |||||||||||||  ||| |||||||||||    
T  37641472 aagccggcaacgacagaactctatcggtttat--tttctttattatgttgtttattcgtttgatcatgtctag 37641542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 165 - 249
Target Start/End: Original strand, 19653 - 19735
Alignment:
Q  165 aattgaagagtgaagccggcaacgatggaactctattggtttatattttctctactatgttgtttatttctttaatcatgtctag 249  Q
    |||||| |||| ||||||||||||| | | |||||| |||||||  ||||| |||||||||||||| ||||||||| ||||||||    
T  19653 aattgatgagtaaagccggcaacgacgaagctctatcggtttat--tttctttactatgttgtttaattctttaattatgtctag 19735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 249
Target Start/End: Original strand, 13215 - 13285
Alignment:
Q  177 aagccggcaacgatggaactctattggtttatattttctctactatgttgtttatttctttaatcatgtctag 249  Q
    ||||||||||||| | | |||||| |||||||  ||||| ||||||||||||||||| |||||| ||||||||    
T  13215 aagccggcaacgacgaagctctatcggtttat--tttctttactatgttgtttatttttttaattatgtctag 13285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 249
Target Start/End: Original strand, 27231 - 27301
Alignment:
Q  177 aagccggcaacgatggaactctattggtttatattttctctactatgttgtttatttctttaatcatgtctag 249  Q
    ||||||||||||| | | |||||| |||||||  ||||| ||||||||||||||||| |||||| ||||||||    
T  27231 aagccggcaacgacgaagctctatcggtttat--tttctttactatgttgtttatttttttaattatgtctag 27301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 181 - 249
Target Start/End: Original strand, 10431933 - 10431999
Alignment:
Q  181 cggcaacgatggaactctattggtttatattttctctactatgttgtttatttctttaatcatgtctag 249  Q
    ||||||||| ||||||||| ||||||||  ||||| ||||| |||||||||||||||| ||||||||||    
T  10431933 cggcaacgacggaactctaatggtttat--tttctttactaggttgtttatttctttattcatgtctag 10431999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 177 - 249
Target Start/End: Original strand, 26557111 - 26557182
Alignment:
Q  177 aagccggcaacgatggaactctattggtttatattttctctactatgttgtttatttctttaatcatgtctag 249  Q
    ||||||||||||| ||||||||||  |||||| |||| | || |||||||||||||||||| |||||||||||    
T  26557111 aagccggcaacgacggaactctatcagtttatttttttt-tattatgttgtttatttcttttatcatgtctag 26557182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 247
Target Start/End: Original strand, 8276614 - 8276682
Alignment:
Q  177 aagccggcaacgatggaactctattggtttatattttctctactatgttgtttatttctttaatcatgtct 247  Q
    ||||||||||||| ||||||||||  ||||||  ||||| || |||||||||||||||||| |||||||||    
T  8276614 aagccggcaacgacggaactctatcagtttat--tttctttattatgttgtttatttcttttatcatgtct 8276682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 249
Target Start/End: Complemental strand, 11825869 - 11825799
Alignment:
Q  177 aagccggcaacgatggaactctattggtttatattttctctactatgttgtttatttctttaatcatgtctag 249  Q
    ||||||||||||| |||||||||| ||||  |||||||| || |||||||||||||  ||| |||||||||||    
T  11825869 aagccggcaacgacggaactctatcggtt--tattttctttattatgttgtttattcgtttgatcatgtctag 11825799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 249
Target Start/End: Original strand, 8397464 - 8397533
Alignment:
Q  177 aagccggcaacgatggaactctattggtttatattttctctactatgttgtttatttctttaatcatgtctag 249  Q
    ||||||||||||| |||||||||  |||||||  ||||| || ||||||||||||| |||| |||||||||||    
T  8397464 aagccggcaacgacggaactctac-ggtttat--tttctttattatgttgtttattcctttgatcatgtctag 8397533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 177 - 250
Target Start/End: Original strand, 10884568 - 10884639
Alignment:
Q  177 aagccggcaacgatggaactctattggtttatattttctctactatgttgtttatttctttaatcatgtctagt 250  Q
    ||||||||||||| |||||| ||||||||  |||||||| |||||||||||||| |||||| || |||| ||||    
T  10884568 aagccggcaacgacggaactttattggtt--tattttctttactatgttgtttaattctttgattatgtttagt 10884639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 249
Target Start/End: Complemental strand, 10107082 - 10107012
Alignment:
Q  177 aagccggcaacgatggaactctattggtttatattttctctactatgttgtttatttctttaatcatgtctag 249  Q
    ||||||||||||| ||||  ||||||||||||  ||||| |||||||||||||| |||||| || ||||||||    
T  10107082 aagccggcaacgacggaatcctattggtttat--tttctttactatgttgtttaattctttgattatgtctag 10107012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 249
Target Start/End: Complemental strand, 2280125 - 2280057
Alignment:
Q  179 gccggcaacgatggaactctattggtttatattttctctactatgttgtttatttctttaatcatgtctag 249  Q
    ||||||||||| |||| ||||| ||||  |||||||| ||| ||||||||| |||||||| ||||||||||    
T  2280125 gccggcaacgacggaattctatcggtt--tattttctttacaatgttgtttgtttctttattcatgtctag 2280057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 249
Target Start/End: Original strand, 26551234 - 26551272
Alignment:
Q  211 tttctctactatgttgtttatttctttaatcatgtctag 249  Q
    ||||| ||||||||||||||||||||| |||||||||||    
T  26551234 tttctttactatgttgtttatttctttcatcatgtctag 26551272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 249
Target Start/End: Complemental strand, 30158543 - 30158480
Alignment:
Q  184 caacgatggaactctattggtttatattttctctactatgttgtttatttctttaatcatgtctag 249  Q
    ||||||||||||||||| |||||||  ||||| || |||||||||||||  ||| |||||||||||    
T  30158543 caacgatggaactctatcggtttat--tttctttattatgttgtttattcgtttgatcatgtctag 30158480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 208 - 249
Target Start/End: Complemental strand, 17532089 - 17532048
Alignment:
Q  208 tattttctctactatgttgtttatttctttaatcatgtctag 249  Q
    |||||||| |||||||||| ||||| ||||||||||||||||    
T  17532089 tattttctttactatgttgcttattgctttaatcatgtctag 17532048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 208 - 249
Target Start/End: Complemental strand, 55032306 - 55032265
Alignment:
Q  208 tattttctctactatgttgtttatttctttaatcatgtctag 249  Q
    |||||||| |||||||||||||||| |||| |||||||||||    
T  55032306 tattttctttactatgttgtttattccttttatcatgtctag 55032265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 217 - 249
Target Start/End: Complemental strand, 25888885 - 25888853
Alignment:
Q  217 tactatgttgtttatttctttaatcatgtctag 249  Q
    |||||||||||||||| ||||||||||||||||    
T  25888885 tactatgttgtttattcctttaatcatgtctag 25888853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 249
Target Start/End: Complemental strand, 42354904 - 42354849
Alignment:
Q  193 aactctattggtttatattttctctactatgttgtttatttctttaatcatgtctag 249  Q
    |||||||| ||||||| |||| | ||||||||||||| ||| |||||||||||||||    
T  42354904 aactctatcggtttatttttttt-tactatgttgtttctttatttaatcatgtctag 42354849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 249
Target Start/End: Complemental strand, 5893 - 5827
Alignment:
Q  181 cggcaacgatggaactctattggtttatattttctctactatgttgtttatttctttaatcatgtctag 249  Q
    ||||||||| |||||||||| | |||||  ||||| ||||||||||||||||  |||||||||||||||    
T  5893 cggcaacgacggaactctatcgatttat--tttctttactatgttgtttattattttaatcatgtctag 5827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 250
Target Start/End: Complemental strand, 53387 - 53323
Alignment:
Q  184 caacgatggaactctattggtttatattttctctactatgttgtttatttctttaatcatgtctagt 250  Q
    |||||| | |||||||| |||||||  ||||| ||||||||||||||||| ||| ||||||||||||    
T  53387 caacgacgaaactctatcggtttat--tttctttactatgttgtttatttatttgatcatgtctagt 53323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 250
Target Start/End: Complemental strand, 68286 - 68222
Alignment:
Q  184 caacgatggaactctattggtttatattttctctactatgttgtttatttctttaatcatgtctagt 250  Q
    |||||| | |||||||| |||||||  ||||| ||||||||||||||||| ||| ||||||||||||    
T  68286 caacgacgaaactctatcggtttat--tttctttactatgttgtttatttatttgatcatgtctagt 68222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 249
Target Start/End: Original strand, 62145 - 62211
Alignment:
Q  181 cggcaacgatggaactctattggtttatattttctctactatgttgtttatttctttaatcatgtctag 249  Q
    ||||||||| |||||||||| || ||||  ||||| ||| ||||||||||||  |||||||||||||||    
T  62145 cggcaacgacggaactctatcgggttat--tttctttaccatgttgtttattattttaatcatgtctag 62211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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