View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20804_low_35 (Length: 250)
Name: NF20804_low_35
Description: NF20804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20804_low_35 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 40 - 250
Target Start/End: Original strand, 26924820 - 26925030
Alignment:
| Q |
40 |
aaaagagaattgtcaggaagaaaaacagtactaataattgtactagatcaaactctttgtttaaaatataaagatcaaatgagaccacagctgtgctacc |
139 |
Q |
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| T |
26924820 |
aaaagagaattgtcaggaagaaaaacagtactaataattgtactagatcaaactctttgtttaaaatatatagatcaaatgagaccacagctgtgctacc |
26924919 |
T |
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| Q |
140 |
aaccagaactcatatttaaatatacactcaataaattaattaaaattatcttgatttttatagttttatatttcaactaaattggtcatactcatatcct |
239 |
Q |
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| T |
26924920 |
aaccagaactcatatttaaatatacactcaataaattaattaaaattatcttgatttttatagttttatatttcaactaaattggtcatactcatatcct |
26925019 |
T |
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| Q |
240 |
ctatcttctgt |
250 |
Q |
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| T |
26925020 |
ctatcttctgt |
26925030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 26924757 - 26924797
Alignment:
| Q |
14 |
ttctcactcactttgatgttgtaattaaaagagaattgtca |
54 |
Q |
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| T |
26924757 |
ttctcactcactttgatgttgtaattaaaagagaattgtca |
26924797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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