View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20804_low_41 (Length: 239)
Name: NF20804_low_41
Description: NF20804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20804_low_41 |
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Alignment Details
Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 20 - 219
Target Start/End: Complemental strand, 40120958 - 40120746
Alignment:
| Q |
20 |
atgtgggaattcttgcaaaa-tataaaacgtgggaatagaattttcttacgcagtaacatagctataac------------aaattacatcagtgatcct |
106 |
Q |
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|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
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| T |
40120958 |
atgtgggaattcttgcaaaaataaaaaacgtgggaatagaattttcttacgcagtaacatagctataagtattaatacgctaaattacatcggtgatcct |
40120859 |
T |
|
| Q |
107 |
ttaagtttgagg-tttgtaataaataaattttaatttttctgttaatcaaacgttacgaaaatgatgatgtggc----aagtgtatgatgtcacatgctt |
201 |
Q |
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|||||||||||| ||| |||||||||||||||||| |||||| ||| ||||||||||||||||||||| | ||||||||||||| |||| ||| |
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| T |
40120858 |
ttaagtttgaggttttataataaataaattttaat-----tgttaaccaagcgttacgaaaatgatgatgtgacagttaagtgtatgatgtgacatactt |
40120764 |
T |
|
| Q |
202 |
tctcatcagacatcttag |
219 |
Q |
| |
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|||||| ||||||||||| |
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|
| T |
40120763 |
tctcattagacatcttag |
40120746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 127
Target Start/End: Complemental strand, 45038528 - 45038489
Alignment:
| Q |
88 |
aaattacatcagtgatcctttaagtttgaggtttgtaata |
127 |
Q |
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|||||||| || |||||||||||||||||||||||||||| |
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|
| T |
45038528 |
aaattacaccaatgatcctttaagtttgaggtttgtaata |
45038489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 127
Target Start/End: Complemental strand, 55617702 - 55617663
Alignment:
| Q |
88 |
aaattacatcagtgatcctttaagtttgaggtttgtaata |
127 |
Q |
| |
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|||||||||||| |||||||||| |||||||||||||||| |
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|
| T |
55617702 |
aaattacatcagggatcctttaaatttgaggtttgtaata |
55617663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 127
Target Start/End: Complemental strand, 55625006 - 55624967
Alignment:
| Q |
88 |
aaattacatcagtgatcctttaagtttgaggtttgtaata |
127 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||||||| |
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|
| T |
55625006 |
aaattacatcagggatcctttaaatttgaggtttgtaata |
55624967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 131
Target Start/End: Original strand, 3848533 - 3848576
Alignment:
| Q |
88 |
aaattacatcagtgatcctttaagtttgaggtttgtaataaata |
131 |
Q |
| |
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||||||||||| || ||||||||||||||||||||||| ||||| |
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| T |
3848533 |
aaattacatcattggtcctttaagtttgaggtttgtaaaaaata |
3848576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 130
Target Start/End: Complemental strand, 35050933 - 35050891
Alignment:
| Q |
88 |
aaattacatcagtgatcctttaagtttgaggtttgtaataaat |
130 |
Q |
| |
|
|||||||||| | || ||||||||||||||||||||||||||| |
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|
| T |
35050933 |
aaattacatccgggaacctttaagtttgaggtttgtaataaat |
35050891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 125
Target Start/End: Complemental strand, 21598798 - 21598761
Alignment:
| Q |
88 |
aaattacatcagtgatcctttaagtttgaggtttgtaa |
125 |
Q |
| |
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|||||||||||| | ||||||||||||||||||||||| |
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|
| T |
21598798 |
aaattacatcaggggtcctttaagtttgaggtttgtaa |
21598761 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 131
Target Start/End: Original strand, 7209833 - 7209876
Alignment:
| Q |
88 |
aaattacatcagtgatcctttaagtttgaggtttgtaataaata |
131 |
Q |
| |
|
|||||||||| | ||||||||| ||||||||||||||||||||| |
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|
| T |
7209833 |
aaattacatcggggatcctttatgtttgaggtttgtaataaata |
7209876 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 130
Target Start/End: Complemental strand, 10827458 - 10827416
Alignment:
| Q |
88 |
aaattacatcagtgatcctttaagtttgaggtttgtaataaat |
130 |
Q |
| |
|
|||||||||||| | || ||||||||||||||||||||||||| |
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|
| T |
10827458 |
aaattacatcagaggtcatttaagtttgaggtttgtaataaat |
10827416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 125
Target Start/End: Complemental strand, 36760890 - 36760853
Alignment:
| Q |
88 |
aaattacatcagtgatcctttaagtttgaggtttgtaa |
125 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||| |
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|
| T |
36760890 |
aaattatatcagggatcctttaagtttgaggtttgtaa |
36760853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 130
Target Start/End: Original strand, 25848272 - 25848314
Alignment:
| Q |
88 |
aaattacatcagtgatcctttaagtttgaggtttgtaataaat |
130 |
Q |
| |
|
|||||||| ||| ||||||||||||||||| |||||||||||| |
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|
| T |
25848272 |
aaattacaccagagatcctttaagtttgagatttgtaataaat |
25848314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 125
Target Start/End: Complemental strand, 39541521 - 39541484
Alignment:
| Q |
88 |
aaattacatcagtgatcctttaagtttgaggtttgtaa |
125 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||||| |
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|
| T |
39541521 |
aaattacatcaggggtcctttaagtttgaggtttgtaa |
39541484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 130
Target Start/End: Complemental strand, 2633655 - 2633614
Alignment:
| Q |
88 |
aaattacatcagtgatcctttaagtttgaggtttgtaataaat |
130 |
Q |
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|||||||| ||| |||||||||||||||||||||||||||||| |
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|
| T |
2633655 |
aaattacaccag-gatcctttaagtttgaggtttgtaataaat |
2633614 |
T |
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