View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20804_low_42 (Length: 236)
Name: NF20804_low_42
Description: NF20804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20804_low_42 |
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| [»] chr5 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 15 - 236
Target Start/End: Complemental strand, 29204776 - 29204555
Alignment:
| Q |
15 |
accaaatacagattttctttacatgtgaaagaatagtaaaatcggacctgtttgtcacagatacatgaaaattagatttgttaacaacgaacatcaactt |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29204776 |
accaaatacagattttctttacatgtgaaagaatagtaaaatcggacctgtttgtcacagatacatgaaaattagatttgttaacaacgaacatcaactt |
29204677 |
T |
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| Q |
115 |
cataaatgaagtaatgaatgacatggtatggcctgcttaccacaaaagggtttcgaacagatataagaatgtctcgctcagccaaaataccttcaactgc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29204676 |
cataaatgaagtaatgaatgacatggtatggcctgcttaccacaaaagggtttcgaacagatataagaatgtctcgctcagccaaaataccttcaactgc |
29204577 |
T |
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| Q |
215 |
atttttacgaatcatatctgcc |
236 |
Q |
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|||||||||||||||||||||| |
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| T |
29204576 |
atttttacgaatcatatctgcc |
29204555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 15 - 236
Target Start/End: Original strand, 12647100 - 12647321
Alignment:
| Q |
15 |
accaaatacagattttctttacatgtgaaagaatagtaaaatcggacctgtttgtcacagatacatgaaaattagatttgttaacaacgaacatcaactt |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12647100 |
accaaatacagattttctttacatgtgaaagaatagtaaaatcggacctgtttgtcacagatacatgaaaattagatttgttaacaacgaacatcaactt |
12647199 |
T |
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| Q |
115 |
cataaatgaagtaatgaatgacatggtatggcctgcttaccacaaaagggtttcgaacagatataagaatgtctcgctcagccaaaataccttcaactgc |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12647200 |
cataaatgaagtaatgaatgacatggtatggcctgcttaccacaaaaggatttcgaacagatataagaatgtctcgctcagccaaaataccttcaactgc |
12647299 |
T |
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| Q |
215 |
atttttacgaatcatatctgcc |
236 |
Q |
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|||||||||||||||||||||| |
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| T |
12647300 |
atttttacgaatcatatctgcc |
12647321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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