View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20804_low_45 (Length: 212)
Name: NF20804_low_45
Description: NF20804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20804_low_45 |
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Alignment Details
Target: chr3 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 17 - 170
Target Start/End: Complemental strand, 50558911 - 50558758
Alignment:
| Q |
17 |
atcaacacaaagcaaaaaccattccgtctttgctagaagtctagaaccaacctaccttcaaataactagagaactaatcatcaatatgggagtatttcgt |
116 |
Q |
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| T |
50558911 |
atcaacacaaagcaaaaaccattccgtccttgctagaagtctagaaccaacctaccttcaaataactagagaactaatcatcaatatgggagtatttcgt |
50558812 |
T |
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| Q |
117 |
ctgtccgctttattgaaggaaccattttnnnnnnnntattaattaattgtttaa |
170 |
Q |
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| T |
50558811 |
ctgtccgctttattgaaggaaccatttttaaaaaaatattaattaattgtttaa |
50558758 |
T |
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