View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20804_low_46 (Length: 209)
Name: NF20804_low_46
Description: NF20804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20804_low_46 |
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Alignment Details
Target: chr8 (Bit Score: 139; Significance: 6e-73; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 16 - 190
Target Start/End: Complemental strand, 6169449 - 6169275
Alignment:
| Q |
16 |
acagataccagtacaacaacaaactaaagataagggccattatcaagacccatgcaacaagttctgaaacagaaaaaccaaacacctgcttaggattcag |
115 |
Q |
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|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| | |||||||||||||||| |
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| T |
6169449 |
acagatacgagtaccacaacaaactaaagataagggccattatcaagacccatgcaacaagttctgaaattggaaaaccataaacctgcttaggattcaa |
6169350 |
T |
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| Q |
116 |
cacacaataaaagacaactaaacaaacctaaatacttaaaatccaccacgaagacgcaaaacaaggtgaagagta |
190 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6169349 |
cacacaataaaagacaactacacaaacctaaatacttaaaatccaccacgaagacgcaaaacaaggtgaagagta |
6169275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 158 - 189
Target Start/End: Original strand, 35000140 - 35000171
Alignment:
| Q |
158 |
ccaccacgaagacgcaaaacaaggtgaagagt |
189 |
Q |
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| T |
35000140 |
ccaccacgaagacgcaaaacaaggtgaagagt |
35000171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 145 - 186
Target Start/End: Original strand, 34999671 - 34999712
Alignment:
| Q |
145 |
aaatacttaaaatccaccacgaagacgcaaaacaaggtgaag |
186 |
Q |
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| T |
34999671 |
aaatacttaatttccaccacgaagacgcaatacaaggtgaag |
34999712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 133; Significance: 2e-69; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 16 - 190
Target Start/End: Original strand, 35100327 - 35100503
Alignment:
| Q |
16 |
acagataccagtacaacaacaaactaaagataagggccattatcaagacccatgcaacaagttctgaaacag-aaaaaccaaacacctgcttaggattca |
114 |
Q |
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| T |
35100327 |
acagatacgagtaccacaacaaacaaaagataagggccattatcaagacccatgcaacaagttctgaaactgaaaaaaccaaaaacatgcttaggattca |
35100426 |
T |
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| Q |
115 |
gcacacaataaaagacaactaaac-aaacctaaatacttaaaatccaccacgaagacgcaaaacaaggtgaagagta |
190 |
Q |
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| T |
35100427 |
gcacacaataaaagacaactaaacaaaacctaaatatttaaaatccaccacgaagacgcaaaacaaggtgaagagta |
35100503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 16 - 190
Target Start/End: Complemental strand, 36295607 - 36295433
Alignment:
| Q |
16 |
acagataccagtacaacaacaaactaaagataagggccattatc-aagacccatgcaacaagttctgaaacagaaaaaccaaacacctgcttaggattca |
114 |
Q |
| |
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|||||||| ||||| ||||||| |||||| || |||||||||| ||||||||||||| ||||||| |||| |||||| | ||||||| |||| || |
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| T |
36295607 |
acagatacgagtaccacaacaagctaaagtaaaaggccattatccaagacccatgcaataagttctcaaactgaaaaa----agacctgct-aggacaca |
36295513 |
T |
|
| Q |
115 |
gcacacaataaaagacaa-----ctaaacaaacctaaatacttaaaatccaccacgaagacgcaaaacaaggtgaagagta |
190 |
Q |
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||||||||||||| | || |||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36295512 |
gcacacaataaaataaaataaaactaaacaaccc-aaatacttaaaatccaccacgaagacgcaaaacaaggtgaagagta |
36295433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 150 - 190
Target Start/End: Original strand, 35108855 - 35108895
Alignment:
| Q |
150 |
cttaaaatccaccacgaagacgcaaaacaaggtgaagagta |
190 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
35108855 |
cttaaaatccaccacgaagacgcaaaacaaggtgaagagta |
35108895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 190
Target Start/End: Complemental strand, 24040004 - 24039961
Alignment:
| Q |
147 |
atacttaaaatccaccacgaagacgcaaaacaaggtgaagagta |
190 |
Q |
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|
| T |
24040004 |
atacttagaatccaccacgaagacgtaaaacaaggtgaagagta |
24039961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 190
Target Start/End: Complemental strand, 47990312 - 47990272
Alignment:
| Q |
150 |
cttaaaatccaccacgaagacgcaaaacaaggtgaagagta |
190 |
Q |
| |
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||||||| ||||||||||| ||||||||||||||||||||| |
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| T |
47990312 |
cttaaaacccaccacgaaggcgcaaaacaaggtgaagagta |
47990272 |
T |
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