View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20804_low_47 (Length: 206)

Name: NF20804_low_47
Description: NF20804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20804_low_47
NF20804_low_47
[»] chr8 (13 HSPs)
chr8 (11-168)||(43998880-43999048)
chr8 (11-104)||(24884990-24885083)
chr8 (11-104)||(21643806-21643899)
chr8 (14-104)||(21642991-21643081)
chr8 (14-104)||(21643366-21643456)
chr8 (53-104)||(17955558-17955609)
chr8 (14-104)||(21641491-21641581)
chr8 (14-104)||(21641866-21641956)
chr8 (14-104)||(21642241-21642331)
chr8 (14-104)||(21642616-21642706)
chr8 (11-69)||(42514180-42514238)
chr8 (11-75)||(32010870-32010934)
chr8 (11-75)||(32016044-32016108)
[»] chr2 (11 HSPs)
chr2 (11-127)||(4163279-4163395)
chr2 (14-104)||(28751454-28751544)
chr2 (11-75)||(44096646-44096710)
chr2 (126-162)||(4163185-4163221)
chr2 (126-162)||(28751346-28751382)
chr2 (11-75)||(42723138-42723202)
chr2 (11-75)||(42728307-42728371)
chr2 (12-74)||(40519925-40519987)
chr2 (13-75)||(44754293-44754355)
chr2 (13-75)||(44759459-44759521)
chr2 (11-75)||(40392610-40392674)
[»] chr3 (18 HSPs)
chr3 (11-104)||(17358115-17358208)
chr3 (11-104)||(34128894-34128987)
chr3 (11-104)||(30338477-30338570)
chr3 (13-104)||(10321722-10321813)
chr3 (11-104)||(54270922-54271015)
chr3 (24-104)||(30341691-30341771)
chr3 (14-113)||(4117307-4117406)
chr3 (11-104)||(3482137-3482230)
chr3 (11-102)||(3476672-3476763)
chr3 (126-162)||(17358300-17358336)
chr3 (126-162)||(34128765-34128801)
chr3 (11-75)||(15762717-15762781)
chr3 (11-75)||(15767878-15767942)
chr3 (11-75)||(17369010-17369074)
chr3 (11-75)||(20090349-20090413)
chr3 (11-75)||(20095474-20095538)
chr3 (126-162)||(30341567-30341603)
chr3 (11-75)||(55129081-55129145)
[»] chr5 (14 HSPs)
chr5 (14-104)||(26709383-26709473)
chr5 (14-104)||(26979117-26979207)
chr5 (11-101)||(24776537-24776627)
chr5 (11-104)||(1413777-1413870)
chr5 (12-82)||(36254114-36254184)
chr5 (126-162)||(26709545-26709581)
chr5 (126-162)||(26979279-26979315)
chr5 (11-84)||(24771099-24771172)
chr5 (11-75)||(17505244-17505308)
chr5 (11-75)||(17510349-17510413)
chr5 (11-75)||(41858877-41858941)
chr5 (11-75)||(42019864-42019928)
chr5 (11-75)||(42024644-42024708)
chr5 (11-75)||(43579951-43580015)
[»] chr7 (17 HSPs)
chr7 (11-100)||(21080768-21080857)
chr7 (11-95)||(2234364-2234448)
chr7 (11-104)||(17495680-17495773)
chr7 (11-104)||(17557441-17557534)
chr7 (11-104)||(47176875-47176968)
chr7 (11-104)||(19309336-19309429)
chr7 (11-104)||(12934674-12934767)
chr7 (11-104)||(16539137-16539230)
chr7 (11-104)||(16626432-16626525)
chr7 (11-104)||(42572222-42572315)
chr7 (11-104)||(43893146-43893239)
chr7 (127-162)||(21080646-21080681)
chr7 (11-75)||(33238346-33238410)
chr7 (11-75)||(33243523-33243587)
chr7 (11-75)||(47994144-47994208)
chr7 (11-75)||(47999319-47999383)
chr7 (11-43)||(32212439-32212471)
[»] chr1 (10 HSPs)
chr1 (11-104)||(5730382-5730475)
chr1 (11-99)||(3584878-3584966)
chr1 (11-100)||(48246412-48246501)
chr1 (126-162)||(5730569-5730605)
chr1 (11-75)||(27711614-27711678)
chr1 (11-75)||(34317972-34318036)
chr1 (11-75)||(36684402-36684466)
chr1 (11-75)||(37409277-37409341)
chr1 (11-75)||(11250863-11250927)
chr1 (11-43)||(37404190-37404222)
[»] chr6 (10 HSPs)
chr6 (11-104)||(2817872-2817965)
chr6 (11-104)||(31981840-31981933)
chr6 (11-104)||(34376206-34376299)
chr6 (11-104)||(34142366-34142459)
chr6 (11-104)||(34154982-34155075)
chr6 (13-102)||(6728166-6728255)
chr6 (11-78)||(24191123-24191190)
chr6 (11-78)||(24192220-24192287)
chr6 (11-75)||(22697930-22697994)
chr6 (11-75)||(22703106-22703170)
[»] chr4 (18 HSPs)
chr4 (11-104)||(53797906-53797999)
chr4 (11-104)||(41393520-41393613)
chr4 (11-104)||(51019098-51019191)
chr4 (11-84)||(9763762-9763835)
chr4 (11-102)||(13710946-13711037)
chr4 (11-104)||(47046031-47046124)
chr4 (11-75)||(21299573-21299637)
chr4 (11-78)||(13695439-13695506)
chr4 (11-75)||(8985145-8985209)
chr4 (11-75)||(13700801-13700865)
chr4 (11-75)||(21304693-21304757)
chr4 (11-75)||(36359672-36359736)
chr4 (11-75)||(39999413-39999477)
chr4 (11-75)||(40004371-40004435)
chr4 (11-75)||(54343547-54343611)
chr4 (11-75)||(54348701-54348765)
chr4 (11-46)||(36354486-36354521)
chr4 (11-43)||(8980057-8980089)
[»] scaffold0060 (1 HSPs)
scaffold0060 (11-104)||(37287-37380)
[»] scaffold0594 (1 HSPs)
scaffold0594 (12-104)||(8933-9025)
[»] scaffold0166 (2 HSPs)
scaffold0166 (11-101)||(18920-19010)
scaffold0166 (11-102)||(13466-13557)
[»] scaffold0517 (1 HSPs)
scaffold0517 (11-75)||(3854-3918)
[»] scaffold0055 (1 HSPs)
scaffold0055 (11-75)||(3368-3432)
[»] scaffold0052 (1 HSPs)
scaffold0052 (11-75)||(81103-81167)


Alignment Details
Target: chr8 (Bit Score: 115; Significance: 1e-58; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 11 - 168
Target Start/End: Complemental strand, 43999048 - 43998880
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttatagaggggatttcaccttgttttctccgccgccccag 110  Q
    |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  43999048 cagagaagaggattcgattctcagttttagagtaaagaatgtaaatcccgagctctctatttatagaggggatttcacctcgttttctccgccgccccag 43998949  T
Q  111 caacggtaacccacgacg-----------tgtgagacttggtctccgtgtgcgggaatctcggcgcacc 168  Q
    ||||||||||||||||||           |||||||||||||||||||||||||||||||||| |||||    
T  43998948 caacggtaacccacgacgtgtggaaaacgtgtgagacttggtctccgtgtgcgggaatctcggagcacc 43998880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 11 - 104
Target Start/End: Original strand, 24884990 - 24885083
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttatagaggggatttcaccttgttttctccgccg 104  Q
    |||||||||||||||||||||| |||||||||| || |||   | ||||||||||||||||||||||| |||||| |||| |||||||||||||    
T  24884990 cagagaagaggattcgattctcggttttggagtgaagaattccattcccgagctctctatttatagagaggatttgacctcgttttctccgccg 24885083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 11 - 104
Target Start/End: Complemental strand, 21643899 - 21643806
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttatagaggggatttcaccttgttttctccgccg 104  Q
    |||||||||||||||||||||| |||||||||| || |||   | ||||||| ||||||||||||||| ||| || |||| |||||||||||||    
T  21643899 cagagaagaggattcgattctcggttttggagtgaagaatcccattcccgaggtctctatttatagagaggaatttacctcgttttctccgccg 21643806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 104
Target Start/End: Complemental strand, 21643081 - 21642991
Alignment:
Q  14 agaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttatagaggggatttcaccttgttttctccgccg 104  Q
    ||||||||||||||||||| |||||||||| || |||   | ||||||| ||||||||||||||| ||| || |||| |||||||||||||    
T  21643081 agaagaggattcgattctcggttttggagtgaagaatcccattcccgaggtctctatttatagagaggaatttacctcgttttctccgccg 21642991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 104
Target Start/End: Complemental strand, 21643456 - 21643366
Alignment:
Q  14 agaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttatagaggggatttcaccttgttttctccgccg 104  Q
    ||||||||||||||||||| |||||||||| || |||   | ||||||| ||||||||||||||| ||| || |||| |||||||||||||    
T  21643456 agaagaggattcgattctcggttttggagtgaagaatcccattcccgaggtctctatttatagagaggaatttacctcgttttctccgccg 21643366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 53 - 104
Target Start/End: Complemental strand, 17955609 - 17955558
Alignment:
Q  53 aaatcccgagctctctatttatagaggggatttcaccttgttttctccgccg 104  Q
    |||||| |||||||||||||||||||||||||| |||| |||||||||||||    
T  17955609 aaatcctgagctctctatttatagaggggatttgacctcgttttctccgccg 17955558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 104
Target Start/End: Complemental strand, 21641581 - 21641491
Alignment:
Q  14 agaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttatagaggggatttcaccttgttttctccgccg 104  Q
    |||||||||||||||||||  ||||||||| || |||   | ||||||| ||||||||||||||| ||| || |||| |||||||||||||    
T  21641581 agaagaggattcgattctcgattttggagtgaagaatcccattcccgaggtctctatttatagagaggaatttacctcgttttctccgccg 21641491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 104
Target Start/End: Complemental strand, 21641956 - 21641866
Alignment:
Q  14 agaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttatagaggggatttcaccttgttttctccgccg 104  Q
    |||||||||||||||||||  ||||||||| || |||   | ||||||| ||||||||||||||| ||| || |||| |||||||||||||    
T  21641956 agaagaggattcgattctcgattttggagtgaagaatcccattcccgaggtctctatttatagagaggaatttacctcgttttctccgccg 21641866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 104
Target Start/End: Complemental strand, 21642331 - 21642241
Alignment:
Q  14 agaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttatagaggggatttcaccttgttttctccgccg 104  Q
    |||||||||||||||||||  ||||||||| || |||   | ||||||| ||||||||||||||| ||| || |||| |||||||||||||    
T  21642331 agaagaggattcgattctcgattttggagtgaagaatcccattcccgaggtctctatttatagagaggaatttacctcgttttctccgccg 21642241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 104
Target Start/End: Complemental strand, 21642706 - 21642616
Alignment:
Q  14 agaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttatagaggggatttcaccttgttttctccgccg 104  Q
    |||||||||||||||||||  ||||||||| || |||   | ||||||| ||||||||||||||| ||| || |||| |||||||||||||    
T  21642706 agaagaggattcgattctcgattttggagtgaagaatcccattcccgaggtctctatttatagagaggaatttacctcgttttctccgccg 21642616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 11 - 69
Target Start/End: Complemental strand, 42514238 - 42514180
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctcta 69  Q
    |||||||||||||||||||||| |||||||||| || ||| | | ||||||||||||||    
T  42514238 cagagaagaggattcgattctcggttttggagtgaagaatctcattcccgagctctcta 42514180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 32010870 - 32010934
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttata 75  Q
    |||||||||| |||||||||||||||||||||| || |||   | |||||||||||| |||||||    
T  32010870 cagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 32010934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 32016044 - 32016108
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttata 75  Q
    |||||||||| |||||||||||||||||||||| || |||   | |||||||||||| |||||||    
T  32016044 cagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 32016108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 6e-36; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 11 - 127
Target Start/End: Complemental strand, 4163395 - 4163279
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttatagaggggatttcaccttgttttctccgccgccccag 110  Q
    |||||||||||||||||||||| |||||||||| || |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||      
T  4163395 cagagaagaggattcgattctcggttttggagtgaagaatgcaaatcccgagctctctatttatagaggggatttaaccttgttttctccgccgacccgc 4163296  T
Q  111 caacggtaacccacgac 127  Q
    ||||| || ||||||||    
T  4163295 caacgttagcccacgac 4163279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 14 - 104
Target Start/End: Complemental strand, 28751544 - 28751454
Alignment:
Q  14 agaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttatagaggggatttcaccttgttttctccgccg 104  Q
    ||||||||||||||||||| |||||||||| || ||| | | |||||||||||||||||||||||||||||| |||| |||||||||||||    
T  28751544 agaagaggattcgattctcggttttggagtgaagaatctcattcccgagctctctatttatagaggggatttgacctcgttttctccgccg 28751454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 44096646 - 44096710
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttata 75  Q
    |||||||||| ||||||||||||||||||||||||| |||   | |||||||||||| |||||||    
T  44096646 cagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 44096710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 162
Target Start/End: Complemental strand, 4163221 - 4163185
Alignment:
Q  126 acgtgtgagacttggtctccgtgtgcgggaatctcgg 162  Q
    ||||||||||||||||||||| |||||||||||||||    
T  4163221 acgtgtgagacttggtctccgcgtgcgggaatctcgg 4163185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 162
Target Start/End: Complemental strand, 28751382 - 28751346
Alignment:
Q  126 acgtgtgagacttggtctccgtgtgcgggaatctcgg 162  Q
    ||||||||||||||||||||| |||||||||||||||    
T  28751382 acgtgtgagacttggtctccgcgtgcgggaatctcgg 28751346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 42723202 - 42723138
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttata 75  Q
    |||||||||| |||||||||||||||||||||| || |||   | |||||||||||| |||||||    
T  42723202 cagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 42723138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 42728371 - 42728307
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttata 75  Q
    |||||||||| |||||||||||||||||||||| || |||   | |||||||||||| |||||||    
T  42728371 cagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 42728307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 74
Target Start/End: Original strand, 40519925 - 40519987
Alignment:
Q  12 agagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttat 74  Q
    ||||||||| |||||||||||||||||||||| || |||   | |||||||||||| ||||||    
T  40519925 agagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttat 40519987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 44754355 - 44754293
Alignment:
Q  13 gagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttata 75  Q
    |||||||| |||||||||||||||||||||| || |||   | |||||||||||| |||||||    
T  44754355 gagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 44754293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 44759521 - 44759459
Alignment:
Q  13 gagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttata 75  Q
    |||||||| |||||||||||||||||||||| || |||   | |||||||||||| |||||||    
T  44759521 gagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 44759459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 40392610 - 40392674
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttata 75  Q
    ||||||| || |||||||||||||||||||||| || |||   | |||||||||||| |||||||    
T  40392610 cagagaaaagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 40392674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 4e-34; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 11 - 104
Target Start/End: Original strand, 17358115 - 17358208
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttatagaggggatttcaccttgttttctccgccg 104  Q
    ||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  17358115 cagagaagaggattcgattctcagttttggagtgaagaatgcaaatcccgagctctctatttatagaggggatttcacctcgttttctctgccg 17358208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 11 - 104
Target Start/End: Complemental strand, 34128987 - 34128894
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttatagaggggatttcaccttgttttctccgccg 104  Q
    ||||||||||||||||||||||||||||||||| || |||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||    
T  34128987 cagagaagaggattcgattctcagttttggagtgaagaatgcaaatcccgacctctctatttatagaggggatttcacctcgttttctccgccg 34128894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 11 - 104
Target Start/End: Complemental strand, 30338570 - 30338477
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttatagaggggatttcaccttgttttctccgccg 104  Q
    |||||||||||||||||||||| |||||||||| || |||  ||||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  30338570 cagagaagaggattcgattctcggttttggagtgaagaatccaaatcccgagctctctatttatagaggggatttgacctcgttttctccgccg 30338477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 13 - 104
Target Start/End: Original strand, 10321722 - 10321813
Alignment:
Q  13 gagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttatagaggggatttcaccttgttttctccgccg 104  Q
    ||||||||||||| |||||| |||||||||| || |||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  10321722 gagaagaggattcaattctcggttttggagtgaagaatgcaaatcccgagctctctatttatagaggggatttgacctcgttttctccgccg 10321813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 11 - 104
Target Start/End: Original strand, 54270922 - 54271015
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttatagaggggatttcaccttgttttctccgccg 104  Q
    |||||||||||||||||||||| |||||||||| || |||   | |||||||||||||||||||||||||||||| |||| |||||||||||||    
T  54270922 cagagaagaggattcgattctcggttttggagtgaagaatcccattcccgagctctctatttatagaggggatttgacctcgttttctccgccg 54271015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 30341771 - 30341691
Alignment:
Q  24 tcgattctcagttttggagtaaataatgtaaatcccgagctctctatttatagaggggatttcaccttgttttctccgccg 104  Q
    ||||||||| |||||||||| || |||   |||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  30341771 tcgattctcggttttggagtgaagaatcccaatcccgagctctctatttatagaggggatttgacctcgttttctccgccg 30341691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 14 - 113
Target Start/End: Complemental strand, 4117406 - 4117307
Alignment:
Q  14 agaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttatagaggggatttcaccttgttttctccgccgccccagcaa 113  Q
    ||||||||||||||||||| |||||||||| || |||   | ||||||||||||||||||||||| || ||  |||| ||||||||||||| ||| ||||    
T  4117406 agaagaggattcgattctcggttttggagtgaagaatcccattcccgagctctctatttatagagaggtttcgacctcgttttctccgccgacccggcaa 4117307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 11 - 104
Target Start/End: Complemental strand, 3482230 - 3482137
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttatagaggggatttcaccttgttttctccgccg 104  Q
    |||| ||||||||||||||||| |||||||||| || |||   | ||||||||||||||||||||||| || ||  |||| |||||||||||||    
T  3482230 cagataagaggattcgattctcggttttggagtgaagaatcccattcccgagctctctatttatagagaggtttcgacctcgttttctccgccg 3482137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 11 - 102
Target Start/End: Complemental strand, 3476763 - 3476672
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttatagaggggatttcaccttgttttctccgc 102  Q
    |||||||||||||||||||||   ||||||||| || |||   | ||||||||||||||||||||||| || ||  ||||||||||||||||    
T  3476763 cagagaagaggattcgattcttgtttttggagtgaagaatcccattcccgagctctctatttatagagaggtttcgaccttgttttctccgc 3476672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 126 - 162
Target Start/End: Original strand, 17358300 - 17358336
Alignment:
Q  126 acgtgtgagacttggtctccgtgtgcgggaatctcgg 162  Q
    |||||||||||||||||||||||||||||||||||||    
T  17358300 acgtgtgagacttggtctccgtgtgcgggaatctcgg 17358336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 126 - 162
Target Start/End: Complemental strand, 34128801 - 34128765
Alignment:
Q  126 acgtgtgagacttggtctccgtgtgcgggaatctcgg 162  Q
    |||||||||||||||||||||||||||||||||||||    
T  34128801 acgtgtgagacttggtctccgtgtgcgggaatctcgg 34128765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 15762781 - 15762717
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttata 75  Q
    |||||||||| |||||||||||||||||||||| || |||   | |||||||||||| |||||||    
T  15762781 cagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 15762717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 15767942 - 15767878
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttata 75  Q
    |||||||||| |||||||||||||||||||||| || |||   | |||||||||||| |||||||    
T  15767942 cagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 15767878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 17369010 - 17369074
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttata 75  Q
    |||||||||| |||||||||||||||||||||| || |||   | |||||||||||| |||||||    
T  17369010 cagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 17369074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 20090413 - 20090349
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttata 75  Q
    |||||||||| |||||||||||||||||||||| || |||   | |||||||||||| |||||||    
T  20090413 cagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 20090349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 20095538 - 20095474
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttata 75  Q
    |||||||||| |||||||||||||||||||||| || |||   | |||||||||||| |||||||    
T  20095538 cagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 20095474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 162
Target Start/End: Complemental strand, 30341603 - 30341567
Alignment:
Q  126 acgtgtgagacttggtctccgtgtgcgggaatctcgg 162  Q
    ||||||||||||||||||||| |||||||||||||||    
T  30341603 acgtgtgagacttggtctccgcgtgcgggaatctcgg 30341567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 55129081 - 55129145
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttata 75  Q
    |||||||||| |||||||||||||||||||||| || |||   | |||||||||||| |||||||    
T  55129081 cagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 55129145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 6e-30; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 14 - 104
Target Start/End: Original strand, 26709383 - 26709473
Alignment:
Q  14 agaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttatagaggggatttcaccttgttttctccgccg 104  Q
    |||||||||||| ||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  26709383 agaagaggattcaattctcagttttggagtgaagaatgcaaatcccgagctctctatttatagaggggatttgacctcgttttctccgccg 26709473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 14 - 104
Target Start/End: Original strand, 26979117 - 26979207
Alignment:
Q  14 agaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttatagaggggatttcaccttgttttctccgccg 104  Q
    |||||||||||| ||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  26979117 agaagaggattcaattctcagttttggagtgaagaatgcaaatcccgagctctctatttatagaggggatttgacctcgttttctccgccg 26979207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 11 - 101
Target Start/End: Complemental strand, 24776627 - 24776537
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttatagaggggatttcaccttgttttctccg 101  Q
    |||||||||| ||||||||||| ||||||||||||| |||   ||||| |||||||||||||||||||||||||  || | ||||||||||    
T  24776627 cagagaagagtattcgattctcggttttggagtaaagaataccaatcctgagctctctatttatagaggggattcgacttcgttttctccg 24776537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 11 - 104
Target Start/End: Complemental strand, 1413870 - 1413777
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttatagaggggatttcaccttgttttctccgccg 104  Q
    |||| ||||||||||||||||| |||||||||| || |||   | |||||||||||||||||||||||||||||| |||| |||| || |||||    
T  1413870 cagataagaggattcgattctcggttttggagtgaagaatcccattcccgagctctctatttatagaggggatttgacctcgtttacttcgccg 1413777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 12 - 82
Target Start/End: Original strand, 36254114 - 36254184
Alignment:
Q  12 agagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttatagagggga 82  Q
    ||||||||||||||||||||| |||||||||| || |||   | |||| ||||||||||||||||||||||    
T  36254114 agagaagaggattcgattctcggttttggagtgaagaatcccattcccaagctctctatttatagagggga 36254184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 126 - 162
Target Start/End: Original strand, 26709545 - 26709581
Alignment:
Q  126 acgtgtgagacttggtctccgtgtgcgggaatctcgg 162  Q
    |||||||||||||||||||||||||||||||||||||    
T  26709545 acgtgtgagacttggtctccgtgtgcgggaatctcgg 26709581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 126 - 162
Target Start/End: Original strand, 26979279 - 26979315
Alignment:
Q  126 acgtgtgagacttggtctccgtgtgcgggaatctcgg 162  Q
    |||||||||||||||||||||||||||||||||||||    
T  26979279 acgtgtgagacttggtctccgtgtgcgggaatctcgg 26979315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 84
Target Start/End: Complemental strand, 24771172 - 24771099
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttatagaggggatt 84  Q
    ||||||||||  || ||||||  ||||||||||||| |||   ||||| |||||||||||||||||||||||||    
T  24771172 cagagaagagtgtttgattcttggttttggagtaaagaataccaatcctgagctctctatttatagaggggatt 24771099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 17505244 - 17505308
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttata 75  Q
    |||||||||| |||||||||||||||||||||| || |||   | |||||||||||| |||||||    
T  17505244 cagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 17505308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 17510349 - 17510413
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttata 75  Q
    |||||||||| |||||||||||||||||||||| || |||   | |||||||||||| |||||||    
T  17510349 cagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 17510413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 41858877 - 41858941
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttata 75  Q
    |||||||||| |||||||||||||||||||||| || |||   | |||||||||||| |||||||    
T  41858877 cagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 41858941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 42019864 - 42019928
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttata 75  Q
    |||||||||| |||||||||||||||||||||| || |||   | |||||||||||| |||||||    
T  42019864 cagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 42019928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 42024644 - 42024708
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttata 75  Q
    |||||||||| |||||||||||| ||||||||| || |||   | |||||||||||| |||||||    
T  42024644 cagagaagagtattcgattctcaattttggagtgaagaatactattcccgagctctcaatttata 42024708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 43579951 - 43580015
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttata 75  Q
    |||||||||| ||||||||||||||||||| || || |||   | |||||||||||| |||||||    
T  43579951 cagagaagagtattcgattctcagttttggtgtgaaaaatactattcccgagctctcaatttata 43580015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 2e-29; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 11 - 100
Target Start/End: Complemental strand, 21080857 - 21080768
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttatagaggggatttcaccttgttttctcc 100  Q
    ||||||||||||||||||||||||||||| ||| || |||| ||||||||||||||||||||||||||||||||| |||| |||||||||    
T  21080857 cagagaagaggattcgattctcagttttgaagtgaagaatgcaaatcccgagctctctatttatagaggggatttgacctcgttttctcc 21080768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 11 - 95
Target Start/End: Complemental strand, 2234448 - 2234364
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttatagaggggatttcaccttgttt 95  Q
    |||||||||||||||||||||| |||||||||| || |||   |||||||||||||||||||||||||||||||| |||| ||||    
T  2234448 cagagaagaggattcgattctcggttttggagtgaagaatactaatcccgagctctctatttatagaggggatttgacctcgttt 2234364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 11 - 104
Target Start/End: Original strand, 17495680 - 17495773
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttatagaggggatttcaccttgttttctccgccg 104  Q
    ||||||||||||||| |||||| ||||||||||||| |||   | ||||||||||||||||||||||||||| ||  ||| |||||||||||||    
T  17495680 cagagaagaggattcaattctcggttttggagtaaagaatcccattcccgagctctctatttatagaggggaattttcctcgttttctccgccg 17495773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 11 - 104
Target Start/End: Complemental strand, 17557534 - 17557441
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttatagaggggatttcaccttgttttctccgccg 104  Q
    ||||||||||||||| |||||| ||||||||||||| |||   | ||||||||||||||||||||||||||| ||  ||| |||||||||||||    
T  17557534 cagagaagaggattcaattctcggttttggagtaaagaatcccattcccgagctctctatttatagaggggaattttcctcgttttctccgccg 17557441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 11 - 104
Target Start/End: Complemental strand, 47176968 - 47176875
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttatagaggggatttcaccttgttttctccgccg 104  Q
    ||||||||||||||||||| || |||||||||| || ||| | | ||||||||||||||||||||||| || ||  ||||||||||||||||||    
T  47176968 cagagaagaggattcgattatcggttttggagtgaagaatctcattcccgagctctctatttatagagaggtttcgaccttgttttctccgccg 47176875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 11 - 104
Target Start/End: Complemental strand, 19309429 - 19309336
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttatagaggggatttcaccttgttttctccgccg 104  Q
    |||||||||||||| ||||||| |||||||||| || |||   | ||||||||||||||||||||||||||| ||  ||| |||||||||||||    
T  19309429 cagagaagaggatttgattctcggttttggagtgaagaatcccattcccgagctctctatttatagaggggaattttcctcgttttctccgccg 19309336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 11 - 104
Target Start/End: Original strand, 12934674 - 12934767
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttatagaggggatttcaccttgttttctccgccg 104  Q
    |||||||||||||||||||||| |||||||||| || |||   | |||||||||||||||||||||||  | ||  |||| |||||||||||||    
T  12934674 cagagaagaggattcgattctcggttttggagtgaagaatcccattcccgagctctctatttatagagatgtttcgacctcgttttctccgccg 12934767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 11 - 104
Target Start/End: Complemental strand, 16539230 - 16539137
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttatagaggggatttcaccttgttttctccgccg 104  Q
    ||||||||||||||  |||||| |||||||||| || |||   | ||||||||||||||||||||||||||| ||  ||| |||||||||||||    
T  16539230 cagagaagaggatttaattctcggttttggagtgaagaatcccattcccgagctctctatttatagaggggaattttcctcgttttctccgccg 16539137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 11 - 104
Target Start/End: Original strand, 16626432 - 16626525
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttatagaggggatttcaccttgttttctccgccg 104  Q
    ||||||||||||||  |||||| |||||||||| || |||   | ||||||||||||||||||||||||||| ||  ||| |||||||||||||    
T  16626432 cagagaagaggatttaattctcggttttggagtgaagaatcccattcccgagctctctatttatagaggggaattttcctcgttttctccgccg 16626525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 11 - 104
Target Start/End: Original strand, 42572222 - 42572315
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttatagaggggatttcaccttgttttctccgccg 104  Q
    |||||||||||||||||||||| |||||||||| || |||   | ||||||| ||||||||||||||| || ||  |||| |||||||||||||    
T  42572222 cagagaagaggattcgattctcggttttggagtgaagaatcccattcccgagttctctatttatagagaggtttcgacctcgttttctccgccg 42572315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 11 - 104
Target Start/End: Original strand, 43893146 - 43893239
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttatagaggggatttcaccttgttttctccgccg 104  Q
    ||||||||||||||||||||||  ||||||||| || |||   | ||||||||||||||||||||| ||||| ||  ||| |||||||||||||    
T  43893146 cagagaagaggattcgattctcgattttggagtgaagaatcccattcccgagctctctatttatagcggggaattttcctcgttttctccgccg 43893239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 162
Target Start/End: Complemental strand, 21080681 - 21080646
Alignment:
Q  127 cgtgtgagacttggtctccgtgtgcgggaatctcgg 162  Q
    ||||||||||||||||||||||||||||||||||||    
T  21080681 cgtgtgagacttggtctccgtgtgcgggaatctcgg 21080646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 33238346 - 33238410
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttata 75  Q
    |||||||||| |||||||||||||||||||||| || |||   | |||||||||||| |||||||    
T  33238346 cagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 33238410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 33243523 - 33243587
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttata 75  Q
    |||||||||| |||||||||||||||||||||| || |||   | |||||||||||| |||||||    
T  33243523 cagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 33243587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 47994144 - 47994208
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttata 75  Q
    |||||||||| |||||||||||||||||||||| || |||   | |||||||||||| |||||||    
T  47994144 cagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 47994208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 47999319 - 47999383
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttata 75  Q
    |||||||||| |||||||||||||||||||||| || |||   | |||||||||||| |||||||    
T  47999319 cagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 47999383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 43
Target Start/End: Complemental strand, 32212471 - 32212439
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagt 43  Q
    |||||||||||||||||||||| ||||||||||    
T  32212471 cagagaagaggattcgattctcggttttggagt 32212439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 2e-29; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 11 - 104
Target Start/End: Original strand, 5730382 - 5730475
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttatagaggggatttcaccttgttttctccgccg 104  Q
    |||||||||||||||||||||| |||||||||| || |||| ||||||||||||||||||||||||||||||||| ||||  ||||||||||||    
T  5730382 cagagaagaggattcgattctcggttttggagtgaagaatgcaaatcccgagctctctatttatagaggggatttgacctcattttctccgccg 5730475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 11 - 99
Target Start/End: Original strand, 3584878 - 3584966
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttatagaggggatttcaccttgttttctc 99  Q
    |||||||||||||||||||||| |||||||||| || |||| |||||| |||||||||||||||||||||||||| |||| ||||||||    
T  3584878 cagagaagaggattcgattctcggttttggagtgaagaatgcaaatcctgagctctctatttatagaggggatttgacctcgttttctc 3584966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 100
Target Start/End: Complemental strand, 48246501 - 48246412
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttatagaggggatttcaccttgttttctcc 100  Q
    |||||||||||||||||||||| |||||| ||| || |||   | | ||||| ||||||||||||||| |||||| |||| |||||||||    
T  48246501 cagagaagaggattcgattctcggttttgtagtgaagaatcccatttccgaggtctctatttatagagaggatttgacctggttttctcc 48246412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 162
Target Start/End: Original strand, 5730569 - 5730605
Alignment:
Q  126 acgtgtgagacttggtctccgtgtgcgggaatctcgg 162  Q
    ||||||||||||||||||| |||||||||||||||||    
T  5730569 acgtgtgagacttggtctctgtgtgcgggaatctcgg 5730605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 27711614 - 27711678
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttata 75  Q
    |||||||||| |||||||||||||||||||||| || |||   | |||||||||||| |||||||    
T  27711614 cagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 27711678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 34318036 - 34317972
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttata 75  Q
    |||||||||| |||||||||||||||||||||| || |||   | |||||||||||| |||||||    
T  34318036 cagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 34317972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 36684466 - 36684402
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttata 75  Q
    |||||||||| |||||||||||||||||||||| || |||   | |||||||||||| |||||||    
T  36684466 cagagaagagtattcgattctcagttttggagtcaagaatactattcccgagctctcaatttata 36684402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 37409341 - 37409277
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttata 75  Q
    |||||||||| |||||||||||||||||||||| || |||   | |||||||||||| |||||||    
T  37409341 cagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 37409277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 11250927 - 11250863
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttata 75  Q
    |||||||||| |||||||||||| |||||||||||| |||   | || ||||||||| |||||||    
T  11250927 cagagaagagtattcgattctcaattttggagtaaagaatactattcacgagctctcaatttata 11250863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 43
Target Start/End: Complemental strand, 37404222 - 37404190
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagt 43  Q
    |||||||||| ||||||||||||||||||||||    
T  37404222 cagagaagagtattcgattctcagttttggagt 37404190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 6e-27; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 11 - 104
Target Start/End: Complemental strand, 2817965 - 2817872
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttatagaggggatttcaccttgttttctccgccg 104  Q
    |||||||||||||||||||||  ||||||||||||| ||| | | |||||||||||||||||||||||||||||| |||| |||||||||||||    
T  2817965 cagagaagaggattcgattcttggttttggagtaaagaatctcattcccgagctctctatttatagaggggatttgacctcgttttctccgccg 2817872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 11 - 104
Target Start/End: Original strand, 31981840 - 31981933
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttatagaggggatttcaccttgttttctccgccg 104  Q
    |||||||||| ||||||||||| |||||||||| || |||   |||||||||||||||||||||||||||||||  || | |||||||||||||    
T  31981840 cagagaagagtattcgattctcggttttggagtgaagaataccaatcccgagctctctatttatagaggggattcgacttcgttttctccgccg 31981933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 11 - 104
Target Start/End: Original strand, 34376206 - 34376299
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttatagaggggatttcaccttgttttctccgccg 104  Q
    |||||||||||||||||||||| |||||||||| || |||   | ||||||||||||||||||||||||||| ||  ||| |||||||||||||    
T  34376206 cagagaagaggattcgattctcggttttggagtgaagaatcccattcccgagctctctatttatagaggggaattttcctcgttttctccgccg 34376299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 11 - 104
Target Start/End: Original strand, 34142366 - 34142459
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttatagaggggatttcaccttgttttctccgccg 104  Q
    |||||||||||||||||||||| |||||||||| || |||  || |||||||| || ||||||||||||||| ||  ||| |||||||||||||    
T  34142366 cagagaagaggattcgattctcggttttggagtgaagaatccaattcccgagcactttatttatagaggggaattttcctcgttttctccgccg 34142459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 11 - 104
Target Start/End: Original strand, 34154982 - 34155075
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttatagaggggatttcaccttgttttctccgccg 104  Q
    |||||||||||||||||||||| |||||||||| || |||  || |||||||| || ||||||||||||||| ||  ||| |||||||||||||    
T  34154982 cagagaagaggattcgattctcggttttggagtgaagaatccaattcccgagcactttatttatagaggggaattttcctcgttttctccgccg 34155075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 102
Target Start/End: Complemental strand, 6728255 - 6728166
Alignment:
Q  13 gagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttatagaggggatttcaccttgttttctccgc 102  Q
    |||||| ||||||||||||| |||||||||| || |||   | ||||||||||||||||||||||| || ||  |||| |||||||||||    
T  6728255 gagaaggggattcgattctcggttttggagtgaagaatcccattcccgagctctctatttatagagaggtttcgacctcgttttctccgc 6728166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 24191190 - 24191123
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttatagag 78  Q
    |||||||||||||||||||||  |||||||||| || |||   | |||||||||||||||||||||||    
T  24191190 cagagaagaggattcgattcttggttttggagtgaagaatcccattcccgagctctctatttatagag 24191123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 24192287 - 24192220
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttatagag 78  Q
    |||||||||||||||||||||  |||||||||| || |||   | |||||||||||||||||||||||    
T  24192287 cagagaagaggattcgattcttggttttggagtgaagaatcccattcccgagctctctatttatagag 24192220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 22697994 - 22697930
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttata 75  Q
    |||||||||| |||||||||||||||||||||| || |||   | |||||||||||| |||||||    
T  22697994 cagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 22697930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 22703170 - 22703106
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttata 75  Q
    |||||||||| |||||||||||||||||||||| || |||   | |||||||||||| |||||||    
T  22703170 cagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 22703106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 6e-27; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 11 - 104
Target Start/End: Original strand, 53797906 - 53797999
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttatagaggggatttcaccttgttttctccgccg 104  Q
    |||||||||||||||||||||| |||||||||| || ||||  |||||||||||||||||||||||||||||||| |||| ||||| |||||||    
T  53797906 cagagaagaggattcgattctcggttttggagtgaagaatgctaatcccgagctctctatttatagaggggatttgacctcgttttatccgccg 53797999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 11 - 104
Target Start/End: Original strand, 41393520 - 41393613
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttatagaggggatttcaccttgttttctccgccg 104  Q
    |||||||||||||||||||||| |||||||||| || |||   | |||||||||||||||||||||||||||||| |||| |||||||||||||    
T  41393520 cagagaagaggattcgattctcggttttggagtgaagaatcccattcccgagctctctatttatagaggggatttgacctcgttttctccgccg 41393613  T

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Target: chr4; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 11 - 104
Target Start/End: Complemental strand, 51019191 - 51019098
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttatagaggggatttcaccttgttttctccgccg 104  Q
    |||||||||||||||||||||| |||||||||| || |||   | ||||||| ||||||||||||||| |||||| ||||||||||||||||||    
T  51019191 cagagaagaggattcgattctcggttttggagtgaagaatcccattcccgaggtctctatttatagagaggattttaccttgttttctccgccg 51019098  T

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Target: chr4; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 11 - 84
Target Start/End: Complemental strand, 9763835 - 9763762
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttatagaggggatt 84  Q
    |||||||||||||||||||||| |||||||||| || |||   |||||||||||||||||||||||||||||||    
T  9763835 cagagaagaggattcgattctcggttttggagtgaagaataccaatcccgagctctctatttatagaggggatt 9763762  T

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Target: chr4; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 11 - 102
Target Start/End: Original strand, 13710946 - 13711037
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttatagaggggatttcaccttgttttctccgc 102  Q
    |||||||||||||||||||||  |||||||||| || |||   | ||||||||||||||||||||||| || ||  ||||||||||||||||    
T  13710946 cagagaagaggattcgattcttggttttggagtgaagaatcccattcccgagctctctatttatagagaggtttcgaccttgttttctccgc 13711037  T

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Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 11 - 104
Target Start/End: Complemental strand, 47046124 - 47046031
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttatagaggggatttcaccttgttttctccgccg 104  Q
    ||||||||| |||||||||||| |||||||||| || |||   | ||||||||||||||||||||||| || ||  |||| |||||||||||||    
T  47046124 cagagaagatgattcgattctcggttttggagtgaagaatcccattcccgagctctctatttatagagaggtttcgacctcgttttctccgccg 47046031  T

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Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 21299637 - 21299573
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttata 75  Q
    |||||||||| ||||||||||||||||||||||||| |||   | |||||||||||| |||||||    
T  21299637 cagagaagagtattcgattctcagttttggagtaaagaatactattcccgagctctcaatttata 21299573  T

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Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 13695439 - 13695506
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttatagag 78  Q
    |||||||||| ||||||||||| |||||||||| || |||   | |||||||||||||||||||||||    
T  13695439 cagagaagagtattcgattctcggttttggagtgaagaatcccattcccgagctctctatttatagag 13695506  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 8985209 - 8985145
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttata 75  Q
    |||||||||| |||||||||||||||||||||| || |||   | |||||||||||| |||||||    
T  8985209 cagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 8985145  T

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Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 13700801 - 13700865
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttata 75  Q
    |||||||||| |||||||||||||||||||||| || |||   | |||||||||||| |||||||    
T  13700801 cagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 13700865  T

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Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 21304757 - 21304693
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttata 75  Q
    |||||||||| |||||||||||||||||||||| || |||   | |||||||||||| |||||||    
T  21304757 cagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 21304693  T

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Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 36359672 - 36359736
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttata 75  Q
    |||||||||| ||||||||||||||||||||||||| |||   | ||| |||||||| |||||||    
T  36359672 cagagaagagtattcgattctcagttttggagtaaagaatactattcctgagctctcaatttata 36359736  T

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Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 39999413 - 39999477
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttata 75  Q
    |||||||||| |||||||||||||||||||||| || |||   | |||||||||||| |||||||    
T  39999413 cagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 39999477  T

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Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 40004371 - 40004435
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttata 75  Q
    |||||||||| |||||||||||||||||||||| || |||   | |||||||||||| |||||||    
T  40004371 cagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 40004435  T

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Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 54343547 - 54343611
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttata 75  Q
    |||||||||| |||||||||||||||||||||| || |||   | |||||||||||| |||||||    
T  54343547 cagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 54343611  T

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Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 54348701 - 54348765
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttata 75  Q
    |||||||||| |||||||||||||||||||||| || |||   | |||||||||||| |||||||    
T  54348701 cagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 54348765  T

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Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 11 - 46
Target Start/End: Original strand, 36354486 - 36354521
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaa 46  Q
    |||||||||| |||||||||||||||||||||||||    
T  36354486 cagagaagagtattcgattctcagttttggagtaaa 36354521  T

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Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 43
Target Start/End: Complemental strand, 8980089 - 8980057
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagt 43  Q
    |||||||||| ||||||||||||||||||||||    
T  8980089 cagagaagagtattcgattctcagttttggagt 8980057  T

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Target: scaffold0060 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 11 - 104
Target Start/End: Original strand, 37287 - 37380
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttatagaggggatttcaccttgttttctccgccg 104  Q
    |||||||||||||||||||||| |||||||||| || ||| | | ||||||||||||||||||||||| |||||| |||| |||||||||||||    
T  37287 cagagaagaggattcgattctcggttttggagtgaagaatctcattcccgagctctctatttatagagaggatttgacctcgttttctccgccg 37380  T

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Target: scaffold0594 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0594
Description:

Target: scaffold0594; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 12 - 104
Target Start/End: Complemental strand, 9025 - 8933
Alignment:
Q  12 agagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttatagaggggatttcaccttgttttctccgccg 104  Q
    |||||||||||||||||||||  ||||||||| || |||   | |||||||||||||||||||||||||||||| |||| |||||||||||||    
T  9025 agagaagaggattcgattctcgtttttggagtgaagaatcccattcccgagctctctatttatagaggggatttgacctcgttttctccgccg 8933  T

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Target: scaffold0166 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 11 - 101
Target Start/End: Complemental strand, 19010 - 18920
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttatagaggggatttcaccttgttttctccg 101  Q
    |||||||||| ||||||||||| ||||||||||||| |||   ||||| |||||||||||||||||||||||||  || | ||||||||||    
T  19010 cagagaagagtattcgattctcggttttggagtaaagaataccaatcctgagctctctatttatagaggggattcgacttcgttttctccg 18920  T

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Target: scaffold0166; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 11 - 102
Target Start/End: Complemental strand, 13557 - 13466
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttatagaggggatttcaccttgttttctccgc 102  Q
    |||||||||||||||||||||  |||||||||| || |||   | ||||||||||||||||||||||| || ||  ||||||||||||||||    
T  13557 cagagaagaggattcgattcttggttttggagtgaagaatcccattcccgagctctctatttatagagaggtttcgaccttgttttctccgc 13466  T

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Target: scaffold0517 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 3854 - 3918
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttata 75  Q
    |||||||||| |||||||||||||||||||||| || |||   | |||||||||||| |||||||    
T  3854 cagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 3918  T

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Target: scaffold0055 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0055
Description:

Target: scaffold0055; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 3368 - 3432
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttata 75  Q
    |||||||||| |||||||||||||||||||||| || |||   | |||||||||||| |||||||    
T  3368 cagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 3432  T

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Target: scaffold0052 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0052
Description:

Target: scaffold0052; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 81167 - 81103
Alignment:
Q  11 cagagaagaggattcgattctcagttttggagtaaataatgtaaatcccgagctctctatttata 75  Q
    |||||||||| |||||||||||||||||||||| || |||   | |||||||||||| |||||||    
T  81167 cagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 81103  T

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