View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20804_low_5 (Length: 514)
Name: NF20804_low_5
Description: NF20804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20804_low_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 477; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 9 - 497
Target Start/End: Original strand, 47695045 - 47695533
Alignment:
| Q |
9 |
agcagagatggcttcgcaaaaacaatgtattctaggctctttgactggtaagatgctgaaaatggaaaccaatctatagtgccgtccttcgtaattctag |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47695045 |
agcagagatggcttcgcaaaaacaatgtattctaggctctttgactggtaagatgctgaaaatggaaaccaatctatagtgccgtccttcgtaattctag |
47695144 |
T |
|
| Q |
109 |
ttcggactacaaattcataaggcaggaatcttggactatggttttgatccttggtgcactaacatggttgttaacaggttggtggacaagattaacaatt |
208 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47695145 |
ttcggactacaaattcataaggcagggatcttggactatggttttgatccttggtgcattaacatggttgttaacaggttggtggacaagattaacaatt |
47695244 |
T |
|
| Q |
209 |
caattggacaagatgccaattctaaatctttgatcggggtccttgatatctatggtttcgaaagctttaaatctaacaggtaatatgtagtttataagaa |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47695245 |
caattggacaagatgccaattctaaatctttgatcggggtccttgatatctatggtttcgaaagctttaaatctaacaggtaatatgtagtttataagaa |
47695344 |
T |
|
| Q |
309 |
caagcatgcctcttgataccacaatattgcattactaaagatgtgaaagcagcagtgtctgcttgttttcaatccagtgcaacttattttcagttttcat |
408 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47695345 |
caagcatgcctcttgataccacaatattgtattactaaagatgtgaaagcagcagtgtctgcttgttttcaatccagtgcaacttattttcagttttcat |
47695444 |
T |
|
| Q |
409 |
gctctgcagttttgagcagttctgcattaattttacaaatgagaagttgcaacagcatttcaatcaggcaaaatctcagaccagataag |
497 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47695445 |
gctctgcagttttgagcagttctgcattaattttacaaatgagaagttgcaacagcatttcaatcaggcaaaatctcagaccagataag |
47695533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 79; Significance: 1e-36; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 188 - 294
Target Start/End: Complemental strand, 35830671 - 35830565
Alignment:
| Q |
188 |
tggtggacaagattaacaattcaattggacaagatgccaattctaaatctttgatcggggtccttgatatctatggtttcgaaagctttaaatctaacag |
287 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
35830671 |
tggtggacaagattaataattcaattggacaagaccccaattctaaatgtttgattggggtccttgatatctatggtttcgaaagctttaaattgaacag |
35830572 |
T |
|
| Q |
288 |
gtaatat |
294 |
Q |
| |
|
||||||| |
|
|
| T |
35830571 |
gtaatat |
35830565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 389 - 489
Target Start/End: Complemental strand, 35830453 - 35830352
Alignment:
| Q |
389 |
aacttattttcagttt-tcatgctctgcagttttgagcagttctgcattaattttacaaatgagaagttgcaacagcatttcaatcaggcaaaatctcag |
487 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||||| || ||||||||||||||||||| |||| |
|
|
| T |
35830453 |
aacttattttcagtttgtcatgctctgcagttttgagcagttctgcattaatttcacaaatgaaaagttgcagcaacatttcaatcaggcaaaatttcag |
35830354 |
T |
|
| Q |
488 |
ac |
489 |
Q |
| |
|
|| |
|
|
| T |
35830353 |
ac |
35830352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 414 - 476
Target Start/End: Complemental strand, 31009758 - 31009696
Alignment:
| Q |
414 |
gcagttttgagcagttctgcattaattttacaaatgagaagttgcaacagcatttcaatcagg |
476 |
Q |
| |
|
|||||||||||||||| || ||||||||||| ||||| ||| |||| ||||| ||||| |||| |
|
|
| T |
31009758 |
gcagttttgagcagttttgtattaattttacgaatgaaaagctgcagcagcacttcaaccagg |
31009696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 414 - 476
Target Start/End: Complemental strand, 31187606 - 31187544
Alignment:
| Q |
414 |
gcagttttgagcagttctgcattaattttacaaatgagaagttgcaacagcatttcaatcagg |
476 |
Q |
| |
|
|||||||||||||||| || ||||||||||| ||||| ||| |||| ||||| ||||| |||| |
|
|
| T |
31187606 |
gcagttttgagcagttttgtattaattttacgaatgaaaagctgcagcagcacttcaaccagg |
31187544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 416 - 476
Target Start/End: Complemental strand, 52153265 - 52153205
Alignment:
| Q |
416 |
agttttgagcagttctgcattaattttacaaatgagaagttgcaacagcatttcaatcagg |
476 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| | || || ||||| ||||||| |
|
|
| T |
52153265 |
agttttgagcagttctgtattaattttacaaatgagaagctacagcaacattttaatcagg |
52153205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 190 - 291
Target Start/End: Complemental strand, 52153441 - 52153340
Alignment:
| Q |
190 |
gtggacaagattaacaattcaattggacaagatgccaattctaaatctttgatcggggtccttgatatctatggtttcgaaagctttaaatctaacaggt |
289 |
Q |
| |
|
||||| |||||||| ||||||||||| |||||| | | ||| |||||| | || || || |||||||||||||| || ||||| ||||| | |||||||| |
|
|
| T |
52153441 |
gtggagaagattaataattcaattgggcaagatccaacttcaaaatctatcattggagttcttgatatctatgggtttgaaagttttaagtttaacaggt |
52153342 |
T |
|
| Q |
290 |
aa |
291 |
Q |
| |
|
|| |
|
|
| T |
52153341 |
aa |
52153340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 415 - 479
Target Start/End: Original strand, 26466609 - 26466673
Alignment:
| Q |
415 |
cagttttgagcagttctgcattaattttacaaatgagaagttgcaacagcatttcaatcaggcaa |
479 |
Q |
| |
|
|||||||||||| | ||||| || || |||||||||||||| ||||| ||||| |||||||||| |
|
|
| T |
26466609 |
cagttttgagcaactatgcatcaacttaacaaatgagaagttacaacaacattttaatcaggcaa |
26466673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University