View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20804_low_7 (Length: 502)
Name: NF20804_low_7
Description: NF20804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20804_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 237 - 484
Target Start/End: Original strand, 454104 - 454351
Alignment:
| Q |
237 |
attaatcgttttcatttcaaccatattaattttaagtcaatttccttccatattacgtgccactaccaagtgtgaacttttaaattttttctctataagc |
336 |
Q |
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| T |
454104 |
attaatcgttttcatttccaccatattaattttaagtcaatttccttccatattacgtgccactaccaagtgtgaactttgaaattttttctctataagc |
454203 |
T |
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| Q |
337 |
cacattttcatgttgtgtttgctaccttaaaatagaatacgcgtgttattgaaagaaagaaaactctttaccataagttactatgaattaattcaatggt |
436 |
Q |
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| T |
454204 |
cacattttcatgttgtgtttgctaccttaaaatagaatacgcgtgttattgaaagaaagaaaactctttaccataagttactatgaattaattcaatggt |
454303 |
T |
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| Q |
437 |
attgaagaagaaaatgaaagaggacacgtgaaaaagggatctcagtta |
484 |
Q |
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| T |
454304 |
attgaagacgaaaatgaaagaggacacgtaaaaaagggatctcagtta |
454351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 11 - 248
Target Start/End: Original strand, 453824 - 454061
Alignment:
| Q |
11 |
cagagagaaccacaccagacagaagtatcagcaaaataaaaggtttgaacttcatcttttttaattagtaaactgaacaaaacaatacttgagaaaagga |
110 |
Q |
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| T |
453824 |
cagagagaaccacaccagacagaagtatcagcaaaataaaaggtttgaacttcatcttttttaattagtaaactgaacacaacaatacttgagaaaagga |
453923 |
T |
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| Q |
111 |
tgaaagaaaatgttcttacaacactcttatttatagtgcatgaagagcatcatcaaattaaatgctatgaataagtggggcctagtcactaacactaatt |
210 |
Q |
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| T |
453924 |
tgaaagaaaatgttcttacaacactcttatttatagtgcatgaagagcatcatcaaattaaatgctatgaataagtggggcctagtcactaacaataatt |
454023 |
T |
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| Q |
211 |
tttgtcacttatcatatttttaggttattaatcgtttt |
248 |
Q |
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| T |
454024 |
tttgtcacttatcatatttttaggttattaatcgtttt |
454061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 15 - 484
Target Start/End: Original strand, 441483 - 441968
Alignment:
| Q |
15 |
gagaaccacaccagacagaagtatcagcaaaataaaaggtttgaacttcatcttttttaattagtaaactgaacaaaacaatacttgagaaaaggatgaa |
114 |
Q |
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| T |
441483 |
gagaaccacaccagacagaagtatcagcaaaacaaaaggtttgaaattcatctttgttaattagttaacag----------tacttgagaaaaggatgag |
441572 |
T |
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| Q |
115 |
agaaaatgttcttacaacactcttatttatagtgcatgaagagcatcatcaaattaaatgctatgaataagtggggcctagtcactaacactaatttttg |
214 |
Q |
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| T |
441573 |
agaaaatgctctaacaacacccatatttatagtgcatgaagagcatcatcaaattaaatgctataagtaaggtggacctactcattaacactaatttttg |
441672 |
T |
|
| Q |
215 |
tc-acttatcatatttttaggttattaatcgttttc------atttcaaccatattaattttaagtcaatttc--cttccatattacgtgccactaccaa |
305 |
Q |
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| T |
441673 |
tctccttatcatattttcacgttattaattgttttcatttcaatttcaaccatattaattttaagtcagtttcatattccagattatctgccactaccaa |
441772 |
T |
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| Q |
306 |
gtgtgaact-tttaaattttttctc---------------tataagccacattttcatgttgtgtttgctaccttaaaatagaatacgcgtgttattgaa |
389 |
Q |
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| T |
441773 |
gtgtgaactattggaagtttttctctatttttcatacagatataagccacattttcatgttg-gtgtgccaccttgaagttgaatacgtgtgttcatgaa |
441871 |
T |
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| Q |
390 |
agaaagaaaactc-tttaccataagttactatg---aattaattcaatggtattgaagaagaaaatgaaagaggacacgtgaaaaagggatctcagtta |
484 |
Q |
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| T |
441872 |
ctaaagaaaactcaattaccataa-tttctatgcaaaattcatttaatgttattgaagaag-aaatgaaagaggacacataaaaaagggatcacagtta |
441968 |
T |
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