View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20804_low_8 (Length: 477)
Name: NF20804_low_8
Description: NF20804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20804_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 18 - 331
Target Start/End: Complemental strand, 11975090 - 11974777
Alignment:
| Q |
18 |
cttacagcaagagatgagaaaagaggtcttcatgctttggaaacactcaaagcctatggtttatctgattttgttgcctttcatcaactagatgtggctg |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11975090 |
cttacagcaagagatgagaaaagaggtcttcatgctttgcaaacactcaaagcctatggtttatctgattttgttgcctttcatcaactagatgtggctg |
11974991 |
T |
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| Q |
118 |
atgatgcaagtgtagcctctcttgcaaattttgtcaaatcacaatttggcaaacttgatattttggtatgannnnnnnnctcgcatttacggtagttgtg |
217 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
11974990 |
atgatgcaagtgtagcctctcttgcagattttgtcaaatcacaatttggcaaacttgatattttggtatgattttttttctcgcatttacggtagttgtg |
11974891 |
T |
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| Q |
218 |
aatataaaccatctgataagatattagatattagacggctcatattttaactgtgtattttgagttaaatagcgcagtagaaatgtgaggagtctgatct |
317 |
Q |
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| T |
11974890 |
aatataaaccatctgataagatattagatattagacggctcatattttaactgtgtattttgagttaaatgacgcagtagaaatgtgagtcgtctgatct |
11974791 |
T |
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| Q |
318 |
tgtttagatgatat |
331 |
Q |
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|||||||||||||| |
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| T |
11974790 |
tgtttagatgatat |
11974777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 18 - 185
Target Start/End: Complemental strand, 12004914 - 12004747
Alignment:
| Q |
18 |
cttacagcaagagatgagaaaagaggtcttcatgctttggaaacactcaaagcctatggtttatctgattttgttgcctttcatcaactagatgtggctg |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||| |
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| T |
12004914 |
cttacagcaagagatgagaaaagaggtcttcatgctttggaaacactcaaagcatctggtttatctgattttgttgtatttcatcaactagatgtggctg |
12004815 |
T |
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| Q |
118 |
atgatgcaagtgtagcctctcttgcaaattttgtcaaatcacaatttggcaaacttgatattttggta |
185 |
Q |
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||| |||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||| ||||| |
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| T |
12004814 |
atgctgcaagtgtagcctctcttgcagattttatcaaatctcaatttggcaaacttgatattctggta |
12004747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 329 - 467
Target Start/End: Complemental strand, 11974708 - 11974572
Alignment:
| Q |
329 |
tattcattgtttgttttgttgttctacatgcatgtttcatacttgtccttgttagtcattatttgattaatcttctaataatttctaattcttgcaacta |
428 |
Q |
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| T |
11974708 |
tattcattgtttgttttgttgttctacatgcatgtttcatacttgtccttgttagtcattatttgattaatctattaataatttctaattcttgcaacta |
11974609 |
T |
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| Q |
429 |
tcatatagttattttatcattttctgcactaattctgtg |
467 |
Q |
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|| ||||||||||||||||| ||||||||||||||||| |
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| T |
11974608 |
tc--atagttattttatcattctctgcactaattctgtg |
11974572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 18 - 185
Target Start/End: Complemental strand, 12014581 - 12014414
Alignment:
| Q |
18 |
cttacagcaagagatgagaaaagaggtcttcatgctttggaaacactcaaagcctatggtttatctgattttgttgcctttcatcaactagatgtggctg |
117 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
12014581 |
cttactgcaagagatgagaaaagaggtcttcatgctttggaaacactcaaagcctctggtttatctgattttgttgtatttcatcaactagatgttgctg |
12014482 |
T |
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| Q |
118 |
atgatgcaagtgtagcctctcttgcaaattttgtcaaatcacaatttggcaaacttgatattttggta |
185 |
Q |
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||| |||||||||||| |||||||| | ||||||||||| | ||||||||||||||||||| ||||| |
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| T |
12014481 |
atgctgcaagtgtagcttctcttgcggaatttgtcaaatctcgatttggcaaacttgatattctggta |
12014414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 25 - 185
Target Start/End: Complemental strand, 12009999 - 12009839
Alignment:
| Q |
25 |
caagagatgagaaaagaggtcttcatgctttggaaacactcaaagcctatggtttatctgattttgttgcctttcatcaactagatgtggctgatgatgc |
124 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||| || |
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| T |
12009999 |
caagagatgagaaaagaggtcttcatgctttggaaacactcaaagcatctggtttatctgattttgttgtatttcatcaactagatgtggctgatgccgc |
12009900 |
T |
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| Q |
125 |
aagtgtagcctctcttgcaaattttgtcaaatcacaatttggcaaacttgatattttggta |
185 |
Q |
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||||||||||||||| ||| ||||||| ||||| | ||||||||||||||||||| ||||| |
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| T |
12009899 |
aagtgtagcctctctcgcagattttgttaaatctcgatttggcaaacttgatattctggta |
12009839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 18 - 185
Target Start/End: Complemental strand, 11980165 - 11979998
Alignment:
| Q |
18 |
cttacagcaagagatgagaaaagaggtcttcatgctttggaaacactcaaagcctatggtttatctgattttgttgcctttcatcaactagatgtggctg |
117 |
Q |
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|
||||||||||||||||||||||||||||||||||| ||||||||||| ||||| | |||||||||||||||||||| |||||||||||||||||||| |
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| T |
11980165 |
cttacagcaagagatgagaaaagaggtcttcatgcattggaaacacttaaagcatctggtttatctgattttgttgtatttcatcaactagatgtggcaa |
11980066 |
T |
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| Q |
118 |
atgatgcaagtgtagcctctcttgcaaattttgtcaaatcacaatttggcaaacttgatattttggta |
185 |
Q |
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||| |||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
11980065 |
atgctgcaagtgtagctactcttgcagattttgtcaaatcccaatttggcaaacttgatattctggta |
11979998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 18 - 185
Target Start/End: Complemental strand, 11984522 - 11984355
Alignment:
| Q |
18 |
cttacagcaagagatgagaaaagaggtcttcatgctttggaaacactcaaagcctatggtttatctgattttgttgcctttcatcaactagatgtggctg |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| | || |||||||||| |||| ||||| ||||||||||| |
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| T |
11984522 |
cttacagcaagagatgagaaaagaggtcttcatgctttggaaacactcaaagcttctggtctttcagattttgttgtcttttatcaagtagatgtggcta |
11984423 |
T |
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| Q |
118 |
atgatgcaagtgtagcctctcttgcaaattttgtcaaatcacaatttggcaaacttgatattttggta |
185 |
Q |
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||| |||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
11984422 |
atgctgcaagtgtagctactcttgcagattttgtcaaatcgcaatttggcaaacttgatattctggta |
11984355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 18 - 184
Target Start/End: Complemental strand, 11992029 - 11991863
Alignment:
| Q |
18 |
cttacagcaagagatgagaaaagaggtcttcatgctttggaaacactcaaagcctatggtttatctgattttgttgcctttcatcaactagatgtggctg |
117 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||| ||||| | |||| | ||||||||||||| ||||||||||||||||| |||| |
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| T |
11992029 |
cttacatcaagagatgagaaaagaggtcttcatgctttggaaacacttaaagcttctggtctttctgattttgttgtatttcatcaactagatgttgctg |
11991930 |
T |
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| Q |
118 |
atgatgcaagtgtagcctctcttgcaaattttgtcaaatcacaatttggcaaacttgatattttggt |
184 |
Q |
| |
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||| | |||||||||| ||||||||| ||||||||||||| |||||||| |||||||||||| |||| |
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| T |
11991929 |
atgcttcaagtgtagcatctcttgcagattttgtcaaatctcaatttggaaaacttgatattctggt |
11991863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 21 - 185
Target Start/End: Complemental strand, 11999693 - 11999529
Alignment:
| Q |
21 |
acagcaagagatgagaaaagaggtcttcatgctttggaaacactcaaagcctatggtttatctgattttgttgcctttcatcaactagatgtggctgatg |
120 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| | |||| | || ||||||||| ||||||||||||||||| ||||||| |
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| T |
11999693 |
acagcaagagatgagaaaagaggtcttcatgctttggaaacactcaaagcttctggtctttcagattttgttttatttcatcaactagatgttgctgatg |
11999594 |
T |
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| Q |
121 |
atgcaagtgtagcctctcttgcaaattttgtcaaatcacaatttggcaaacttgatattttggta |
185 |
Q |
| |
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| |||||||||| ||||||||| ||||||||||||| || |||||||||||||||||| ||||| |
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| T |
11999593 |
cttcaagtgtagcatctcttgcagattttgtcaaatcccattttggcaaacttgatattctggta |
11999529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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