View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20804_low_9 (Length: 458)

Name: NF20804_low_9
Description: NF20804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20804_low_9
NF20804_low_9
[»] chr7 (5 HSPs)
chr7 (18-242)||(9371572-9371796)
chr7 (18-242)||(6472374-6472611)
chr7 (18-233)||(35013104-35013333)
chr7 (71-241)||(21358172-21358358)
chr7 (401-443)||(33865610-33865651)
[»] chr5 (9 HSPs)
chr5 (18-242)||(32863401-32863637)
chr5 (18-306)||(3173850-3174153)
chr5 (18-242)||(10572455-10572692)
chr5 (153-227)||(41959231-41959305)
chr5 (401-446)||(30441314-30441359)
chr5 (153-229)||(43299993-43300069)
chr5 (261-306)||(18740035-18740081)
chr5 (258-306)||(32863333-32863383)
chr5 (46-100)||(18739525-18739581)
[»] chr4 (16 HSPs)
chr4 (18-242)||(8433110-8433347)
chr4 (18-239)||(46164496-46164730)
chr4 (18-215)||(21604205-21604415)
chr4 (18-241)||(47825658-47825897)
chr4 (88-239)||(25808838-25809002)
chr4 (18-240)||(54785318-54785555)
chr4 (46-103)||(21355773-21355830)
chr4 (46-100)||(23218367-23218421)
chr4 (46-87)||(13740399-13740440)
chr4 (401-445)||(34703780-34703824)
chr4 (48-100)||(45143890-45143942)
chr4 (48-100)||(45152659-45152711)
chr4 (258-306)||(8433367-8433416)
chr4 (262-306)||(23218585-23218628)
chr4 (150-240)||(23218474-23218564)
chr4 (258-306)||(47825592-47825640)
[»] chr1 (12 HSPs)
chr1 (18-242)||(29599381-29599618)
chr1 (18-242)||(48183991-48184228)
chr1 (18-233)||(324441-324668)
chr1 (27-241)||(26014279-26014506)
chr1 (18-242)||(26354756-26354994)
chr1 (18-144)||(16764648-16764775)
chr1 (18-113)||(6165160-6165255)
chr1 (49-144)||(10801711-10801807)
chr1 (401-445)||(28549377-28549421)
chr1 (401-445)||(41866997-41867041)
chr1 (260-306)||(26354696-26354743)
chr1 (258-293)||(26014229-26014265)
[»] chr8 (14 HSPs)
chr8 (18-242)||(27576513-27576752)
chr8 (18-242)||(22432421-22432659)
chr8 (18-233)||(18068341-18068564)
chr8 (18-144)||(29182705-29182831)
chr8 (18-239)||(774811-775046)
chr8 (18-239)||(780465-780700)
chr8 (46-206)||(6786239-6786409)
chr8 (27-144)||(22014706-22014824)
chr8 (46-100)||(1668023-1668077)
chr8 (46-100)||(16658738-16658792)
chr8 (46-100)||(38521370-38521424)
chr8 (145-183)||(787884-787922)
chr8 (150-240)||(16658595-16658685)
chr8 (18-85)||(43916025-43916094)
[»] chr3 (6 HSPs)
chr3 (18-241)||(9456167-9456403)
chr3 (46-100)||(2338961-2339015)
chr3 (46-100)||(52893349-52893403)
chr3 (403-445)||(50831196-50831238)
chr3 (403-445)||(50844615-50844657)
chr3 (401-445)||(23217065-23217108)
[»] chr2 (4 HSPs)
chr2 (18-242)||(25697697-25697935)
chr2 (46-100)||(3935519-3935573)
chr2 (46-93)||(38978520-38978567)
chr2 (150-199)||(38978627-38978676)
[»] chr6 (6 HSPs)
chr6 (55-239)||(16497344-16497541)
chr6 (18-241)||(32396985-32397221)
chr6 (18-81)||(9302935-9302998)
chr6 (401-445)||(11074875-11074918)
chr6 (258-308)||(16497556-16497608)
chr6 (260-306)||(14125096-14125143)
[»] scaffold1160 (1 HSPs)
scaffold1160 (46-111)||(2374-2439)
[»] scaffold0054 (1 HSPs)
scaffold0054 (18-144)||(2734-2861)
[»] scaffold0285 (1 HSPs)
scaffold0285 (18-113)||(8494-8589)
[»] scaffold0393 (1 HSPs)
scaffold0393 (46-100)||(11313-11367)


Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-116; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 9371796 - 9371572
Alignment:
Q  18 agaatcaatacagaagattgaggggggtgcggcggtgatggatggagaaggagaagagtggtcgcggctcgccggcagtggtgtggtggtggatgttgtt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9371796 agaatcaatacagaagattgaggggggtgcggcggtgatggatggagaaggagaagagtggtcgcggctcgccggcagtggtgtggtggtggatgttgtt 9371697  T
Q  118 cggtggttttgctttggctgggagaaggcgcatcagatgagagagaaaggggaagaggaaatgaaattgaattggtaatattcatattagttaagggcat 217  Q
    |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9371696 cggtggttttgctttggctgggagaacgcgcatcagatgaaagagaaaggggaagaggaaatgaaattgaattggtaatattcatattagttaagggcat 9371597  T
Q  218 tatagtaatttccagtatataaata 242  Q
    |||||||||||||||| ||||||||    
T  9371596 tatagtaatttccagtgtataaata 9371572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 6472374 - 6472611
Alignment:
Q  18 agaatcaatacagaagattgaggggggtgcggcggtgatggatggagaaggagaagagtggtcgcggctcgccggcagtggtgtggtggtggatgttgtt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6472374 agaatcaatacagaagattgaggggggtgcggcggtgatggatggagaaggagaagagtggtcgcggctcgccggcagtggtgtggtggtggatgttgtt 6472473  T
Q  118 cggtggttttgctttggctgggagaag-------------gcgcatcagatgagagagaaaggggaagaggaaatgaaattgaattggtaatattcatat 204  Q
    |||||||||||||||||||||||||||             ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  6472474 cggtggttttgctttggctgggagaagaaaaaagaggaacgcgcatcagatgaaagagaaaggggaagaggaaatgaaattgaattggtaatattcatat 6472573  T
Q  205 tagttaagggcattatagtaatttccagtatataaata 242  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  6472574 tagttaagggcattatagtaatttccagtgtataaata 6472611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 18 - 233
Target Start/End: Original strand, 35013104 - 35013333
Alignment:
Q  18 agaatcaatacagaagattgagggg-ggtgcggcggtgatggatggagaaggagaagagtggtcgcggctcgccggcagtggtgtggtggtggatgttgt 116  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  35013104 agaatcaatacagaagattgagggggggtgcggcggtgatggatggagaaggagaagagtggtcgcggcccgccggcagtggtgtggtggtggatgttgt 35013203  T
Q  117 tcggtggttttgctttggctgggagaag-------------gcgcatcagatgagagagaaaggggaagaggaaatgaaattgaattggtaatattcata 203  Q
    |||||||||||||||| |||||||||||             ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  35013204 tcggtggttttgctttcgctgggagaagaaaaaagaggaacgcgcatcagatgaaagagaaaggggaaaaggaaatgaaattgaattggtaatattcata 35013303  T
Q  204 ttagttaagggcattatagtaatttccagt 233  Q
    ||||||||||||||||||||||||||||||    
T  35013304 ttagttaagggcattatagtaatttccagt 35013333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 71 - 241
Target Start/End: Original strand, 21358172 - 21358358
Alignment:
Q  71 aagagtggtcgcggctcgccggcagtggtgtggtggtggatgttgttcggtggttttgctttggctgggagaag----------------gcgcatcaga 154  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                ||||||||||    
T  21358172 aagagtggtcgcggctcgccggcagtggtgtggtggtggatgttgttcggtggttttgctttggctgggagaagaaaaaagaggaacgccgcgcatcaga 21358271  T
Q  155 tgagagagaaaggggaagaggaaatgaaattgaattggtaatattcatattagttaagggcattatagtaatttccagtatataaat 241  Q
    ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  21358272 tgaaagagaaaggggaaaaggaaatgaaattgaattggtaatattcatattagttaagggcattatagtaatttccagtgtataaat 21358358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 401 - 443
Target Start/End: Original strand, 33865610 - 33865651
Alignment:
Q  401 aatcctaatgtacaatgcacacaacacctataaaaccctaatc 443  Q
    |||||||||||||||||||||||| ||||| ||||||||||||    
T  33865610 aatcctaatgtacaatgcacacaagaccta-aaaaccctaatc 33865651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 32863637 - 32863401
Alignment:
Q  18 agaatcaatacagaagattgaggggggtgcggcggtgatggatggagaaggagaagagtggtcgcggctcgccggcagtggtgtggtggtggatgttgtt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32863637 agaatcaatacagaagattgaggggggtgcggcggtgatggatggagaaggagaagagtggtcgcggctcgccggcagtggtgtggtggtggatgttgtt 32863538  T
Q  118 cggtggttttgctttggctgggagaag------------gcgcatcagatgagagagaaaggggaagaggaaatgaaattgaattggtaatattcatatt 205  Q
    |||||||||||||||||||||||||||            ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  32863537 cggtggttttgctttggctgggagaagaaaaaaaggaacgcgcatcagatgaaagagaaaggggaagaggaaatgaaattgaattggtaatattcatatt 32863438  T
Q  206 agttaagggcattatagtaatttccagtatataaata 242  Q
    |||||||||||||||||||||||||||| ||||||||    
T  32863437 agttaagggcattatagtaatttccagtgtataaata 32863401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 306
Target Start/End: Complemental strand, 3174153 - 3173850
Alignment:
Q  18 agaatcaatacagaagattgaggggggtgcggcggtgatggatggagaaggagaagagtggtcgcggctcgccggcagtggtgtggtggtggatgttgtt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3174153 agaatcaatacagaagattgaggggggtgcggcggtgatggatggagaaggagaagagtggtcgcggctcgccggcagtggtgtggtggtggatgttgtt 3174054  T
Q  118 cggtggttttgctttggctgggagaag-------------gcgcatcagatgagagagaaaggggaagaggaaatgaaattgaattggtaatattcatat 204  Q
    |||||||||||||||||||||||||||             ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  3174053 cggtggttttgctttggctgggagaagaaaaaagaggaatgcgcatcagatgaaagagaaaggggaagaggaaatgaaattgaattggtaatattcatat 3173954  T
Q  205 tagttaagggcattatagtaatttccagtatataaata-nnnnnnnnnnnnnnnagagatggggtggcggtggct-ccccttgccacccccagttccacc 302  Q
    ||||||||||||||||||||||||||||| ||||||||                ||||||||||||||||||||| ||||||||||||||||||||| ||    
T  3173953 tagttaagggcattatagtaatttccagtgtataaatatattttattttattttagagatggggtggcggtggctcccccttgccacccccagttccgcc 3173854  T
Q  303 actg 306  Q
    ||||    
T  3173853 actg 3173850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 10572692 - 10572455
Alignment:
Q  18 agaatcaatacagaagattgaggggggtgcggcggtgatggatggagaaggagaagagtggtcgcggctcgccggcagtggtgtggtggtggatgttgtt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10572692 agaatcaatacagaagattgaggggggtgcggcggtgatggatggagaaggagaagagtggtcgcggctcgccggcagtggtgtggtggtggatgttgtt 10572593  T
Q  118 cggtggttttgctttggctgggagaag-------------gcgcatcagatgagagagaaaggggaagaggaaatgaaattgaattggtaatattcatat 204  Q
    |||||||||||||||||||||||||||             ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||    
T  10572592 cggtggttttgctttggctgggagaagaaaaaagaggaacgcgcatcagatgaaagagaaaggggaagaggaaatgaaattgaattggtaatattcgtat 10572493  T
Q  205 tagttaagggcattatagtaatttccagtatataaata 242  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  10572492 tagttaagggcattatagtaatttccagtgtataaata 10572455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 153 - 227
Target Start/End: Original strand, 41959231 - 41959305
Alignment:
Q  153 gatgagagagaaaggggaagaggaaatgaaattgaattggtaatattcatattagttaagggcattatagtaatt 227  Q
    ||||| |||||||||| ||||||||||||| | ||||||| |||| |||||||| ||||||| || |||||||||    
T  41959231 gatgaaagagaaagggaaagaggaaatgaagtagaattgggaatactcatattacttaagggtataatagtaatt 41959305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 401 - 446
Target Start/End: Complemental strand, 30441359 - 30441314
Alignment:
Q  401 aatcctaatgtacaatgcacacaacacctataaaaccctaatccta 446  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||    
T  30441359 aatcctaatgtacaatgcacacaacacctctaaaaccctaaaccta 30441314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 153 - 229
Target Start/End: Complemental strand, 43300069 - 43299993
Alignment:
Q  153 gatgagagagaaaggggaagaggaaatgaaattgaattggtaatattcatattagttaagggcattatagtaatttc 229  Q
    ||||| |||||||||| ||||||||||||| | ||||||| | || |||||||| | ||||| || |||||||||||    
T  43300069 gatgaaagagaaagggaaagaggaaatgaagtagaattgggattactcatattactgaagggtataatagtaatttc 43299993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 306
Target Start/End: Original strand, 18740035 - 18740081
Alignment:
Q  261 gatggggtggcggtggct-ccccttgccacccccagttccaccactg 306  Q
    |||||||||||||||||| |||||||||| |||||||||| ||||||    
T  18740035 gatggggtggcggtggctcccccttgccaaccccagttccgccactg 18740081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 258 - 306
Target Start/End: Complemental strand, 32863383 - 32863333
Alignment:
Q  258 agagatggggtggcggtggct-ccccttgcca-cccccagttccaccactg 306  Q
    ||||||||||||||||||||| |||||||||| ||||||||||| ||||||    
T  32863383 agagatggggtggcggtggctcccccttgccaccccccagttccgccactg 32863333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 100
Target Start/End: Original strand, 18739525 - 18739581
Alignment:
Q  46 gcggcggtgatggatggagaaggagaagagtgg--tcgcggctcgccggcagtggtg 100  Q
    ||||||||||||||||||||| ||| |||||||  ||||||||| ||||| ||||||    
T  18739525 gcggcggtgatggatggagaaagaggagagtggtctcgcggctcaccggcggtggtg 18739581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 182; Significance: 3e-98; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 8433110 - 8433347
Alignment:
Q  18 agaatcaatacagaagattgaggggggtgcggcggtgatggatggagaaggagaagagtggtcgcggctcgccggcagtggtgtggtggtggatgttgtt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8433110 agaatcaatacagaagattgaggggggtgcggcggtgatggatggagaaggagaagagtggtcgcggctcgccggcagtggtgtggtggtggatgttgtt 8433209  T
Q  118 cggtggttttgctttggctgggagaag-------------gcgcatcagatgagagagaaaggggaagaggaaatgaaattgaattggtaatattcatat 204  Q
    |||||||||||||||||||||||||||             ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  8433210 cggtggttttgctttggctgggagaagaaaaaagaggaacgcgcatcagatgaaagagaaaggggaagaggaaatgaaattgaattggtaatattcatat 8433309  T
Q  205 tagttaagggcattatagtaatttccagtatataaata 242  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  8433310 tagttaagggcattatagtagtttccagtgtataaata 8433347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 46164496 - 46164730
Alignment:
Q  18 agaatcaatacagaagattgaggggggtgcggcggtgatggatggagaaggagaagagtggtcgcggctcgccggcagtggtgtggtggtggatgttgtt 117  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46164496 agaatcaatatagaagatagaggggggtgcggcggtgatggatggagaaggagaagagtggtcgcggctcgccggcagtggtgtggtggtggatgttgtt 46164595  T
Q  118 cggtggttttgctttggctgggagaag-------------gcgcatcagatgagagagaaaggggaagaggaaatgaaattgaattggtaatattcatat 204  Q
    |||| ||||||||||||||||||||||             ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  46164596 cggtagttttgctttggctgggagaagaaaaaagaggaacgcgcatcagatgaaagagaaaggggaagaggaaatgaaattgaattggtaatattcatat 46164695  T
Q  205 tagttaagggcattatagtaatttccagtatataa 239  Q
    ||||||||||||||||||||||||| ||| |||||    
T  46164696 tagttaagggcattatagtaatttcgagtgtataa 46164730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 18 - 215
Target Start/End: Complemental strand, 21604415 - 21604205
Alignment:
Q  18 agaatcaatacagaagattgaggggggtgcggcggtgatggatggagaaggagaagagtggtcgcggctcgccggcagtggtgtggtggtggatgttgtt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21604415 agaatcaatacagaagattgaggggggtgcggcggtgatggatggagaaggagaagagtggtcgcggctcgccggcagtggtgtggtggtggatgttgtt 21604316  T
Q  118 cggtggttttgctttggctgggagaag-------------gcgcatcagatgagagagaaaggggaagaggaaatgaaattgaattggtaatattcatat 204  Q
    |||||||||||||||||||||||||||             ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  21604315 cggtggttttgctttggctgggagaagaaaaaagaggaacgcgcatcagatgaaagagaaaggggaagaggaaatgaaattgaattggtaatattcatat 21604216  T
Q  205 tagttaagggc 215  Q
    |||||||||||    
T  21604215 tagttaagggc 21604205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 47825897 - 47825658
Alignment:
Q  18 agaatcaatacagaagattgaggggggtgcggcggtgatggatggagaaggagaagagtggtcgcggctcgccggcagtggtgtggtggtggatgttgtt 117  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47825897 agaatcaatacagaagattgaggggg-tgcggcggtgatggatggagaaggagaagagtggtcgcggctcgccggcagtggtgtggtggtggatgttgtt 47825799  T
Q  118 cggtggttttgctttggctgggagaag-------------gcgcatcagatgagagagaaagggga----agaggaaatgaaattgaattggtaatattc 200  Q
    |||||| |||||||||||| |||||||             ||||||||||||| ||||||||| ||    ||| ||||||||||||||||||||||||||    
T  47825798 cggtggatttgctttggcttggagaagaaaaaagaggaacgcgcatcagatgaaagagaaaggagaaaggagatgaaatgaaattgaattggtaatattc 47825699  T
Q  201 atattagttaagggcattatagtaatttccagtatataaat 241  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  47825698 atattaattaagggcattatagtaatttccagtatataaat 47825658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 88 - 239
Target Start/End: Original strand, 25808838 - 25809002
Alignment:
Q  88 gccggcagtggtgtggtggtggatgttgttcggtggttttgctttggctgggagaag-------------gcgcatcagatgagagagaaaggggaagag 174  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||             ||||||||||||| ||||||||||||||||    
T  25808838 gccggcagtggtgtggtggtggatgttgttcggtggttttgctttggctgggagaagaaaaaagaggaacgcgcatcagatgaaagagaaaggggaagag 25808937  T
Q  175 gaaatgaaattgaattggtaatattcatattagttaagggcattatagtaatttccagtatataa 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  25808938 gaaatgaaattgaattggtaatattcatattagttaagggcattatagtaaattccagtgtataa 25809002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 54785318 - 54785555
Alignment:
Q  18 agaatcaatacagaagattgaggggggtgcggcggtgatggatggagaaggagaagagtggtcgcggctcgccggcagtggtgtggtggtggatgttgtt 117  Q
    |||||||||||||||||| |||| || |||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||    
T  54785318 agaatcaatacagaagatcgaggaggatgcggcggtgatggatggagaaggaggagagtggttgcggctcgccggcggtggtgtggtggtggatgttgtt 54785417  T
Q  118 cggtggttttgctttggctgggagaag------gcgca----tcagatgagagagaaag-----gggaagaggaaatgaaattgaattggtaatattcat 202  Q
    |||||| |||||||||||||||| |||      | | |     ||||||| ||||||||     | | ||||||||||||||||||||||||||||||||    
T  54785418 cggtggatttgctttggctgggaaaagaaaaaagagaaacgcgcagatgaaagagaaagagaaagaggagaggaaatgaaattgaattggtaatattcat 54785517  T
Q  203 attagttaagggcattatagtaatttccagtatataaa 240  Q
    |||||  ||||||||||  ||||||||  |||||||||    
T  54785518 attagcgaagggcattacggtaatttcaggtatataaa 54785555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 46 - 103
Target Start/End: Complemental strand, 21355830 - 21355773
Alignment:
Q  46 gcggcggtgatggatggagaaggagaagagtggtcgcggctcgccggcagtggtgtgg 103  Q
    ||||||||||||||||||||||||| |||||||||||||||| || || |||||||||    
T  21355830 gcggcggtgatggatggagaaggaggagagtggtcgcggctcacccgcggtggtgtgg 21355773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 46 - 100
Target Start/End: Original strand, 23218367 - 23218421
Alignment:
Q  46 gcggcggtgatggatggagaaggagaagagtggtcgcggctcgccggcagtggtg 100  Q
    ||||| ||||||||||||||||||| |||||||||||||||| ||||| ||||||    
T  23218367 gcggcagtgatggatggagaaggaggagagtggtcgcggctcaccggcggtggtg 23218421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 13740399 - 13740440
Alignment:
Q  46 gcggcggtgatggatggagaaggagaagagtggtcgcggctc 87  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  13740399 gcggcggtgatggatggagaaggaggagagtggtcgcggctc 13740440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 401 - 445
Target Start/End: Original strand, 34703780 - 34703824
Alignment:
Q  401 aatcctaatgtacaatgcacacaacacctataaaaccctaatcct 445  Q
    |||||||||||||||||||||||| ||||| ||||||||||||||    
T  34703780 aatcctaatgtacaatgcacacaagacctaaaaaaccctaatcct 34703824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 48 - 100
Target Start/End: Complemental strand, 45143942 - 45143890
Alignment:
Q  48 ggcggtgatggatggagaaggagaagagtggtcgcggctcgccggcagtggtg 100  Q
    ||||||||||||||||||||||| |||||| ||||||||| ||||| ||||||    
T  45143942 ggcggtgatggatggagaaggaggagagtgatcgcggctcaccggcggtggtg 45143890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 48 - 100
Target Start/End: Complemental strand, 45152711 - 45152659
Alignment:
Q  48 ggcggtgatggatggagaaggagaagagtggtcgcggctcgccggcagtggtg 100  Q
    ||||||||||||||||||||||| |||||| ||||||||| ||||| ||||||    
T  45152711 ggcggtgatggatggagaaggaggagagtgatcgcggctcaccggcggtggtg 45152659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 258 - 306
Target Start/End: Original strand, 8433367 - 8433416
Alignment:
Q  258 agagatggggtggcggtggct-ccccttgccacccccagttccaccactg 306  Q
    ||||||||||||||||||||| ||||||||||||||| ||||| ||||||    
T  8433367 agagatggggtggcggtggctcccccttgccacccccggttccgccactg 8433416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 262 - 306
Target Start/End: Original strand, 23218585 - 23218628
Alignment:
Q  262 atggggtggcggtggctccccttgccacccccagttccaccactg 306  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||    
T  23218585 atggggtggcggtggctcccc-tgccacccccagttccgccactg 23218628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 150 - 240
Target Start/End: Original strand, 23218474 - 23218564
Alignment:
Q  150 tcagatgagagagaaaggggaagaggaaatgaaattgaattggtaatattcatattagttaagggcattatagtaatttccagtatataaa 240  Q
    |||||||| ||||||| ||||||||||||||| | ||||| || ||||||  || || | ||||  ||| | |||||||||||||||||||    
T  23218474 tcagatgaaagagaaacgggaagaggaaatgagactgaataggaaatattagtactattgaaggatatttttgtaatttccagtatataaa 23218564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 306
Target Start/End: Complemental strand, 47825640 - 47825592
Alignment:
Q  258 agagatggggtggcggtggct-ccccttgccacccccagttccaccactg 306  Q
    ||||||||||||||||||||| |||||||||| ||||||||||| |||||    
T  47825640 agagatggggtggcggtggctcccccttgcca-ccccagttccatcactg 47825592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 182; Significance: 3e-98; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 29599381 - 29599618
Alignment:
Q  18 agaatcaatacagaagattgaggggggtgcggcggtgatggatggagaaggagaagagtggtcgcggctcgccggcagtggtgtggtggtggatgttgtt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29599381 agaatcaatacagaagattgaggggggtgcggcggtgatggatggagaaggagaagagtggtcgcggctcgccggcagtggtgtggtggtggatgttgtt 29599480  T
Q  118 cggtggttttgctttggctgggagaag-------------gcgcatcagatgagagagaaaggggaagaggaaatgaaattgaattggtaatattcatat 204  Q
    |||||||||||||||||||||||||||             ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  29599481 cggtggttttgctttggctgggagaagaaaaaagaggaacgcgcatcagatgaaagagaaaggggaagaggaaatgaaattgaattggtaatattcatat 29599580  T
Q  205 tagttaagggcattatagtaatttccagtatataaata 242  Q
    |||||||||||||||||| |||||||||| ||||||||    
T  29599581 tagttaagggcattataggaatttccagtgtataaata 29599618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 48184228 - 48183991
Alignment:
Q  18 agaatcaatacagaagattgaggggggtgcggcggtgatggatggagaaggagaagagtggtcgcggctcgccggcagtggtgtggtggtggatgttgtt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  48184228 agaatcaatacagaagattgaggggggtgcggcggtgatggatggagaagaagaagagtggtcgcggcttgccggcagtggtgtggtggtggatgttgtt 48184129  T
Q  118 cggtggttttgctttggctgggagaag-------------gcgcatcagatgagagagaaaggggaagaggaaatgaaattgaattggtaatattcatat 204  Q
    |||||||||||||||||||||||||||             ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  48184128 cggtggttttgctttggctgggagaagaaaaaagaggaacgcgcatcagatgaaagagaaaggggaagaggaaatgaaattgaattggtaatattcatat 48184029  T
Q  205 tagttaagggcattatagtaatttccagtatataaata 242  Q
    || |||||||||||||||||||||||||| ||||||||    
T  48184028 taattaagggcattatagtaatttccagtgtataaata 48183991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 18 - 233
Target Start/End: Complemental strand, 324668 - 324441
Alignment:
Q  18 agaatcaatacagaagattgaggggggtgcggcggtgatggatggagaaggagaagagtggtcgcggctcgccggcagtggtgtggtggtggatgttgtt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  324668 agaatcaatacagaagattgaggggggtgcggcggtgatggatggagaaggagaagagtggtcgcggctcgccggcagtggtgtggtggtggatgttgtt 324569  T
Q  118 cggtggttttgctttggctgggagaag-------------gcgcatcagatgagagagaaaggggaagaggaaatgaaattgaattggtaatattcatat 204  Q
    |||||||||||||||||||||||||||             ||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||    
T  324568 cggtggttttgctttggctgggagaagaaaaaagaggaacgcgcatcagatgaaagagaaaggggaagaagaaatgaaattgaattggt-atattcatat 324470  T
Q  205 tagttaagggcattatagtaatttccagt 233  Q
    |||||||||||||||||||||||||||||    
T  324469 tagttaagggcattatagtaatttccagt 324441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 27 - 241
Target Start/End: Complemental strand, 26014506 - 26014279
Alignment:
Q  27 acagaagattgaggggggtgcggcggtgatggatggagaaggagaagagtggtcgcggctcgccggcagtggtgtggtggtggatgttgttcggtggttt 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  26014506 acagaagattgaggggggtgcggcggtgatggatggagaaggagaagagtggtcgcggctcgccagcagtggtgtggtggtggatattgttcggtggttt 26014407  T
Q  127 tgctttggctggga-------------gaaggcgcatcagatgagagagaaaggggaagaggaaatgaaattgaattggtaatattcatattagttaagg 213  Q
    ||||||||||||||             ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26014406 tgctttggctgggagatgaaaaaagaggaacgcgcatcagatgaaagagaaaggggaagaggaaatgaaattgaattggtaatattcatattagttaagg 26014307  T
Q  214 gcattatagtaatttccagtatataaat 241  Q
    |||||||||||||||||||| |||||||    
T  26014306 gcattatagtaatttccagtgtataaat 26014279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 26354994 - 26354756
Alignment:
Q  18 agaatcaatacagaagattgaggggggtgcggcggtgatggatggagaaggagaagagtggtcgcggctcgccggcagtggtgtggtggtggatgttgtt 117  Q
    |||||||||||||||||| |||| || |||||||||||||||||||||||||| ||||||||||||| |||||||| |||||| |||||||||| |||||    
T  26354994 agaatcaatacagaagatggaggaggatgcggcggtgatggatggagaaggaggagagtggtcgcggttcgccggcggtggtgcggtggtggatattgtt 26354895  T
Q  118 cggt-ggttttgctttggctgggagaag-------------gcgcatcagatgagagagaaaggggaagaggaaatgaaattgaattggtaatattcata 203  Q
    |||| || ||||||||||||||||||||             ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  26354894 cggtcggatttgctttggctgggagaagaaaaaagacgaacgcgcatcagatgaaagagaaaggggaagaggaaatgaaattgaattggtaatattcata 26354795  T
Q  204 ttagttaagggcattatagtaatttccagtatataaata 242  Q
    ||| | ||||||||| |||||||||||||| ||||||||    
T  26354794 ttaataaagggcattgtagtaatttccagtgtataaata 26354756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 18 - 144
Target Start/End: Original strand, 16764648 - 16764775
Alignment:
Q  18 agaatcaatacagaagattgaggggggtgcggcggtgatggatggagaaggagaagagtggtcgcggctcgccggcagtggtgtggtggtggatgt--tg 115  Q
    |||||||| ||||||||| |||| |  ||| | |||||||||||||||||||| |||||||||||||||| || || |||||||||||||||||||  ||    
T  16764648 agaatcaaaacagaagatggaggagtatgcagtggtgatggatggagaaggaggagagtggtcgcggctcaccagcggtggtgtggtggtggatgtaatg 16764747  T
Q  116 ttcggtggttttgctttggctgggagaag 144  Q
    |||||| |  ||||||||| |||||||||    
T  16764748 ttcggtcg-cttgctttggttgggagaag 16764775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 6165160 - 6165255
Alignment:
Q  18 agaatcaatacagaagattgaggggggtgcggcggtgatggatggagaaggagaagagtggtcgcggctcgccggcagtggtgtggtggtggatgt 113  Q
    |||||| | ||||||||| |||| |  ||| |||||||||||||||||||||| |||||||||||||||| || || |||||||||||||||||||    
T  6165160 agaatcgaaacagaagatggaggagtatgcagcggtgatggatggagaaggaggagagtggtcgcggctcaccagcggtggtgtggtggtggatgt 6165255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 49 - 144
Target Start/End: Original strand, 10801711 - 10801807
Alignment:
Q  49 gcggtgatggatggagaaggagaagagtggtcgcggctcgccggcagtggtgtggtggtggatgt--tgttcggtggttttgctttggctgggagaag 144  Q
    |||||||||||||||||||||| |||||||||||||||| |  || |||||||||||||||||||  |||| |||||  ||||||||| |||||||||    
T  10801711 gcggtgatggatggagaaggaggagagtggtcgcggctcacaagcggtggtgtggtggtggatgtaatgttaggtgg-cttgctttggttgggagaag 10801807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 401 - 445
Target Start/End: Complemental strand, 28549421 - 28549377
Alignment:
Q  401 aatcctaatgtacaatgcacacaacacctataaaaccctaatcct 445  Q
    |||||||||||||||||||||||| ||||| ||||||||||||||    
T  28549421 aatcctaatgtacaatgcacacaagacctaaaaaaccctaatcct 28549377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 401 - 445
Target Start/End: Original strand, 41866997 - 41867041
Alignment:
Q  401 aatcctaatgtacaatgcacacaacacctataaaaccctaatcct 445  Q
    |||||||||||||||||||||||| ||||| ||||||||||||||    
T  41866997 aatcctaatgtacaatgcacacaagacctaaaaaaccctaatcct 41867041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 260 - 306
Target Start/End: Complemental strand, 26354743 - 26354696
Alignment:
Q  260 agatggggtggcggtggct-ccccttgccacccccagttccaccactg 306  Q
    ||||||||||||||||||| |||||||||||| |||||||| ||||||    
T  26354743 agatggggtggcggtggctcccccttgccacctccagttccgccactg 26354696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 293
Target Start/End: Complemental strand, 26014265 - 26014229
Alignment:
Q  258 agagatggggtggcggtggct-ccccttgccaccccc 293  Q
    ||||||||||||||||||||| |||||||||||||||    
T  26014265 agagatggggtggcggtggctcccccttgccaccccc 26014229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 178; Significance: 8e-96; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 27576752 - 27576513
Alignment:
Q  18 agaatcaatacagaagattgaggggggtgcggcggtgatggatggagaaggagaagagtggtcgcggctcgccggcagtggtgtggtggtggatgttgtt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27576752 agaatcaatacagaagattgaggggggtgcggcggtgatggatggagaaggagaagagtggtcgcggctcgccggcagtggtgtggtggtggatgttgtt 27576653  T
Q  118 cggtggttttgctttggctgggagaag---------------gcgcatcagatgagagagaaaggggaagaggaaatgaaattgaattggtaatattcat 202  Q
    |||||||||||||||||||||||||||               ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  27576652 cggtggttttgctttggctgggagaagaaaaaagaggaacgcgcgcatcagatgaaagagaaaggggaagaggaaatgaaattgaattggtaatattcat 27576553  T
Q  203 attagttaagggcattatagtaatttccagtatataaata 242  Q
    |||| |||||||||||||||||||||||||| ||||||||    
T  27576552 attaattaagggcattatagtaatttccagtgtataaata 27576513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 22432421 - 22432659
Alignment:
Q  18 agaatcaatacagaagattgaggggggtgcggcggtgatggatggagaaggagaagagtggtcgcggctcgccggcagtggtgtggtggtggatgttgtt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22432421 agaatcaatacagaagattgaggggggtgcggcggtgatggatggagaaggagaagagtggtcgcggctcgccggcagtggtgtggtggtggatgttgtt 22432520  T
Q  118 cggtggttttgctttggctgggagaag-------------gcgcatcagatg-agagagaaaggggaagaggaaatgaaattgaattggtaatattcata 203  Q
    |||||||||||||||||||||||||||             |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  22432521 cggtggttttgctttggctgggagaagaaaaaagaggaacgcgcatcagatgaaaagagaaaggggaagaggaaatgaaattgaattggtaatattcata 22432620  T
Q  204 ttagttaagggcattatagtaatttccagtatataaata 242  Q
    |||||||||||||||| ||||||||||||| ||||||||    
T  22432621 ttagttaagggcattaaagtaatttccagtgtataaata 22432659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 18 - 233
Target Start/End: Complemental strand, 18068564 - 18068341
Alignment:
Q  18 agaatcaatacagaagattgaggggggtgcggcggtgatggatggagaaggagaagagtggtcgcggctcgccggcagtggtgtggtggtggatgttgtt 117  Q
    ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18068564 agaatcaatacagaagattgaggaggatgcggcggtgatggatggagaaggagaagagtggtcgcggctcgccggcagtggtgtggtggtggatgttgtt 18068465  T
Q  118 cggtggttttgctttggctgggagaag------gcgca--tcagatgagagagaaaggggaagaggaaatgaaattgaattggtaatattcatattagtt 209  Q
    |||||||||||||||||||||||||||      | | |   ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  18068464 cggtggttttgctttggctgggagaagaaaaaagaggaacgcagatgaaagagaaaggggaagaggaaatgaaattgaattggtaatattcatattaatt 18068365  T
Q  210 aagggcattatagtaatttccagt 233  Q
    ||||||||||||||||||||||||    
T  18068364 aagggcattatagtaatttccagt 18068341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 18 - 144
Target Start/End: Original strand, 29182705 - 29182831
Alignment:
Q  18 agaatcaatacagaagattgaggggggtgcggcggtgatggatggagaaggagaagagtggtcgcggctcgccggcagtggtgtggtggtggatgttgtt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  29182705 agaatcaatacagaagattgaggggggtgcggcggtgatggatggagaaggagaagagtggtcgcggctcgccagcagtggtgtggtggtggatgttgtt 29182804  T
Q  118 cggtggttttgctttggctgggagaag 144  Q
    |||||||||||||||||||||||||||    
T  29182805 cggtggttttgctttggctgggagaag 29182831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 774811 - 775046
Alignment:
Q  18 agaatcaatacagaagattgaggggggtgcggcggtgatggatggagaaggagaagagtggtcgcggctcgccggcagtggtgtggtggtggatgttgtt 117  Q
    |||||||||||||||||| |||| || |||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||    
T  774811 agaatcaatacagaagatggaggaggatgcggcggtgatggatggagaaggaggagagtggtcgcggttcgccggcggtggtgtggtggtggatgttgtt 774910  T
Q  118 cggt-ggttttgctttggctgggagaag-------------gcgcatcagatgagagagaaaggggaagaggaaatgaaattgaattggtaatattcata 203  Q
    |||| || ||||||||||||||||||||             |||||||||||   || |||||||||||||||||||||||||||||||||||||| |||    
T  774911 cggtcggatttgctttggctgggagaagaaaaaagaggaacgcgcatcagattgaagggaaaggggaagaggaaatgaaattgaattggtaatattgata 775010  T
Q  204 ttagttaagggcattatagtaatttccagtatataa 239  Q
    ||| | ||||| |||  |||||||||| || |||||    
T  775011 ttaataaagggtattgaagtaatttcctgtgtataa 775046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 780465 - 780700
Alignment:
Q  18 agaatcaatacagaagattgaggggggtgcggcggtgatggatggagaaggagaagagtggtcgcggctcgccggcagtggtgtggtggtggatgttgtt 117  Q
    |||||||||||||||||| |||| || |||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||    
T  780465 agaatcaatacagaagatggaggaggatgcggcggtgatggatggagaaggaggagagtggtcgcggttcgccggcggtggtgtggtggtggatgttgtt 780564  T
Q  118 cggt-ggttttgctttggctgggagaag-------------gcgcatcagatgagagagaaaggggaagaggaaatgaaattgaattggtaatattcata 203  Q
    |||| || ||||||||||||||||||||             |||||||||||   || |||||||||||||||||||||||||||||||||||||| |||    
T  780565 cggtcggatttgctttggctgggagaagaaaaaagaggaacgcgcatcagattgaagggaaaggggaagaggaaatgaaattgaattggtaatattgata 780664  T
Q  204 ttagttaagggcattatagtaatttccagtatataa 239  Q
    ||| | ||||| |||  |||||||||| || |||||    
T  780665 ttaataaagggtattgaagtaatttcctgtgtataa 780700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 46 - 206
Target Start/End: Complemental strand, 6786409 - 6786239
Alignment:
Q  46 gcggcggtgatggatggagaaggagaagagtggtcgcggctcgccggcagtggtgtggtggtggatgttgttcggt-ggttttgctttggctgggagaa- 143  Q
    ||||||||||||||||||||||||| ||||||||||||| ||| |||| ||||| ||||||||||| |||||| || || ||   ||||||||||||||     
T  6786409 gcggcggtgatggatggagaaggaggagagtggtcgcggttcgacggcggtggtttggtggtggatattgttcagtcggattcaatttggctgggagaaa 6786310  T
Q  144 ---------ggcgcatcagatgagagagaaaggggaagaggaaatgaaattgaattggtaatattcatatta 206  Q
               |||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||    
T  6786309 aaaaaaacttacgca-cagatgaaagagaaaggggaagagaaaatgaaattgaattggtaatattcatatta 6786239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 27 - 144
Target Start/End: Complemental strand, 22014824 - 22014706
Alignment:
Q  27 acagaagattgaggggggtgcggcggtgatggatggagaaggagaagagtggtcgcggctcgccggcagtggtgtggtggtggatgt--tgttcggtggt 124  Q
    ||||||||| |||| |  ||| |||||||||||||||||||||| |||||||||||||||| || || |||||||||||||||||||  |||||||| |     
T  22014824 acagaagatggaggagtatgcagcggtgatggatggagaaggaggagagtggtcgcggctcaccagcggtggtgtggtggtggatgtactgttcggtcg- 22014726  T
Q  125 tttgctttggctgggagaag 144  Q
     ||||||||| |||||||||    
T  22014725 cttgctttggttgggagaag 22014706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 46 - 100
Target Start/End: Complemental strand, 1668077 - 1668023
Alignment:
Q  46 gcggcggtgatggatggagaaggagaagagtggtcgcggctcgccggcagtggtg 100  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||    
T  1668077 gcggcggtgatggatggagaaggaggagagtggtcgcggctcaccggcggtggtg 1668023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 46 - 100
Target Start/End: Complemental strand, 16658792 - 16658738
Alignment:
Q  46 gcggcggtgatggatggagaaggagaagagtggtcgcggctcgccggcagtggtg 100  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||    
T  16658792 gcggcggtgatggatggagaaggaggagagtggtcgcggctcaccggcggtggtg 16658738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 46 - 100
Target Start/End: Original strand, 38521370 - 38521424
Alignment:
Q  46 gcggcggtgatggatggagaaggagaagagtggtcgcggctcgccggcagtggtg 100  Q
    ||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  38521370 gcggcagtgatggatggagaaggagaagagtggtcgcggctcaccggcggtggtg 38521424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 183
Target Start/End: Original strand, 787884 - 787922
Alignment:
Q  145 gcgcatcagatgagagagaaaggggaagaggaaatgaaa 183  Q
    ||||||||||||| || ||||||||||||||||||||||    
T  787884 gcgcatcagatgaaagtgaaaggggaagaggaaatgaaa 787922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 150 - 240
Target Start/End: Complemental strand, 16658685 - 16658595
Alignment:
Q  150 tcagatgagagagaaaggggaagaggaaatgaaattgaattggtaatattcatattagttaagggcattatagtaatttccagtatataaa 240  Q
    |||||||| ||||||| ||||||||||||||| | ||||| || ||||||  || || | ||||  ||| | |||||||||||||||||||    
T  16658685 tcagatgaaagagaaacgggaagaggaaatgagactgaataggaaatattagtactattgaaggatatttttgtaatttccagtatataaa 16658595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 43916094 - 43916025
Alignment:
Q  18 agaatcaatacagaagattgaggggggtgcggcggtgatggatggagaaggaga--agagtggtcgcggc 85  Q
    |||||||| |||||| || |||| || |||| |||||||||||||||||||| |  ||||||||||||||    
T  43916094 agaatcaacacagaaaatagaggaggatgcgacggtgatggatggagaaggaaatgagagtggtcgcggc 43916025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 177; Significance: 3e-95; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 9456403 - 9456167
Alignment:
Q  18 agaatcaatacagaagattgaggggggtgcggcggtgatggatggagaaggagaagagtggtcgcggctcgccggcagtggtgtggtggtggatgttgtt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  9456403 agaatcaatacagaagattgaggggggtgcggcggtgatggatggagaaggagaagagtggtcgcagctcgccggcagtggtgtggtggtggatgttgtt 9456304  T
Q  118 cggtggttttgctttggctgggagaag-------------gcgcatcagatgagagagaaaggggaagaggaaatgaaattgaattggtaatattcatat 204  Q
    |||||||||||||||||||||||||||             ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  9456303 cggtggttttgctttggctgggagaagaaaaaagaggaacgcgcatcagatgaaagagaaaggggaagaggaaatgaaattgaattggtaatattcatat 9456204  T
Q  205 tagttaagggcattatagtaatttccagtatataaat 241  Q
    || |||||||||||||||||||||||||| |||||||    
T  9456203 taattaagggcattatagtaatttccagtgtataaat 9456167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 46 - 100
Target Start/End: Original strand, 2338961 - 2339015
Alignment:
Q  46 gcggcggtgatggatggagaaggagaagagtggtcgcggctcgccggcagtggtg 100  Q
    ||||| ||||||||||||||||||| |||||||||||||||| ||||| ||||||    
T  2338961 gcggcagtgatggatggagaaggaggagagtggtcgcggctcaccggcggtggtg 2339015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 46 - 100
Target Start/End: Complemental strand, 52893403 - 52893349
Alignment:
Q  46 gcggcggtgatggatggagaaggagaagagtggtcgcggctcgccggcagtggtg 100  Q
    ||||||||||||||||||||||||| |||||| ||||||||| ||||| ||||||    
T  52893403 gcggcggtgatggatggagaaggaggagagtgatcgcggctcaccggcggtggtg 52893349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 403 - 445
Target Start/End: Complemental strand, 50831238 - 50831196
Alignment:
Q  403 tcctaatgtacaatgcacacaacacctataaaaccctaatcct 445  Q
    |||||||||||||| |||||||||| || ||||||||||||||    
T  50831238 tcctaatgtacaatacacacaacacttaaaaaaccctaatcct 50831196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 403 - 445
Target Start/End: Original strand, 50844615 - 50844657
Alignment:
Q  403 tcctaatgtacaatgcacacaacacctataaaaccctaatcct 445  Q
    |||||||||||||| |||||||||| || ||||||||||||||    
T  50844615 tcctaatgtacaatacacacaacacttaaaaaaccctaatcct 50844657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 401 - 445
Target Start/End: Complemental strand, 23217108 - 23217065
Alignment:
Q  401 aatcctaatgtacaatgcacacaacacctataaaaccctaatcct 445  Q
    ||||||||||||||||||||| || ||||| ||||||||||||||    
T  23217108 aatcctaatgtacaatgcacagaagaccta-aaaaccctaatcct 23217065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 171; Significance: 1e-91; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 25697697 - 25697935
Alignment:
Q  18 agaatcaatacagaagattgaggggggtgcggcggtgatggatggagaaggagaagagtggtcgcggctcgccggcagtggtgtggtggtggatgttgtt 117  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  25697697 agaatctatacagaagattgaggggggtgcggcggtgatggatggagaaggagaagagtggtcgcggctcgccagcagtggtgtggtggtggatgttgtt 25697796  T
Q  118 cggtggttttgctttggctgggagaag-------------gcgcatcagatg-agagagaaaggggaagaggaaatgaaattgaattggtaatattcata 203  Q
    |||||||||||||||||||||||||||             |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  25697797 cggtggttttgctttggctgggagaagaaaaaagaggaacgcgcatcagatgaaaagagaaaggggaagaggaaatgaaattgaattggtaatattcata 25697896  T
Q  204 ttagttaagggcattatagtaatttccagtatataaata 242  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  25697897 ttagttaagggcattatagtaatttccagtgtataaata 25697935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 46 - 100
Target Start/End: Original strand, 3935519 - 3935573
Alignment:
Q  46 gcggcggtgatggatggagaaggagaagagtggtcgcggctcgccggcagtggtg 100  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||    
T  3935519 gcggcggtgatggatggagaaggaggagagtggtcgcggctcaccggcggtggtg 3935573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 46 - 93
Target Start/End: Original strand, 38978520 - 38978567
Alignment:
Q  46 gcggcggtgatggatggagaaggagaagagtggtcgcggctcgccggc 93  Q
    ||||||||||||||||||||||||| |||||| ||||||||| |||||    
T  38978520 gcggcggtgatggatggagaaggaggagagtgatcgcggctcaccggc 38978567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 199
Target Start/End: Original strand, 38978627 - 38978676
Alignment:
Q  150 tcagatgagagagaaaggggaagaggaaatgaaattgaattggtaatatt 199  Q
    |||||||| ||||||| ||||||||||||||||| ||||| || ||||||    
T  38978627 tcagatgaaagagaaacgggaagaggaaatgaaactgaataggaaatatt 38978676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 142; Significance: 2e-74; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 55 - 239
Target Start/End: Original strand, 16497344 - 16497541
Alignment:
Q  55 atggatggagaaggagaagagtggtcgcggctcgccggcagtggtgtggtggtggatgttgttcggtggttttgctttggctgggagaag---------- 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              
T  16497344 atggatggagaaggagaagagtggtcgcggctcgccggcagtggtgtggtggtggatgttgttcggtggttttgctttggctgggagaagaaaaaagagg 16497443  T
Q  145 ---gcgcatcagatgagagagaaaggggaagaggaaatgaaattgaattggtaatattcatattagttaagggcattatagtaatttccagtatataa 239  Q
       ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  16497444 aacgcgcatcagatgaaagagaaaggggaagaggaaatgaaattgaattggtaatattcatattagttaagggcattatagtaattttcagtgtataa 16497541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 32397221 - 32396985
Alignment:
Q  18 agaatcaatacagaagattgaggggggtgcggcggtgatggatggagaaggagaagagtggtcgcggctcgccggcagtggtgtggtggtggatgttgtt 117  Q
    |||||||||  ||||||| |||| || |||||||||||||||||||| ||||| |||||||||| || |||||||| |||||||||||||||||||||||    
T  32397221 agaatcaattaagaagatggaggaggatgcggcggtgatggatggagcaggaggagagtggtcggggatcgccggcggtggtgtggtggtggatgttgtt 32397122  T
Q  118 cggt-ggttttgctttggctgggagaag-------------gcgcatcagatgagagagaaaggggaagaggaaatgaaattgaattggtaatattcata 203  Q
    |||| || ||||||||||||||||||||             ||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||    
T  32397121 cggtcggatttgctttggctgggagaagaaaaaagagtaacgcgcatcagatgaaagag-aaggggaagaggaaatgaaattgaattggtaacattcata 32397023  T
Q  204 ttagttaagggcattatagtaatttccagtatataaat 241  Q
    ||| | ||||||||| ||||||||||| || |||||||    
T  32397022 ttaataaagggcattgtagtaatttcctgtgtataaat 32396985  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 9302998 - 9302935
Alignment:
Q  18 agaatcaatacagaagattgaggggggtgcggcggtgatggatggagaaggagaagagtggtcg 81  Q
    |||||||||| ||||||| |||  || ||| |||||||||||||||||||||| ||||||||||    
T  9302998 agaatcaatatagaagatggagtaggatgcagcggtgatggatggagaaggaggagagtggtcg 9302935  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 401 - 445
Target Start/End: Original strand, 11074875 - 11074918
Alignment:
Q  401 aatcctaatgtacaatgcacacaacacctataaaaccctaatcct 445  Q
    |||||||||||||||||||||||| ||||| ||||||||||||||    
T  11074875 aatcctaatgtacaatgcacacaagaccta-aaaaccctaatcct 11074918  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 258 - 308
Target Start/End: Original strand, 16497556 - 16497608
Alignment:
Q  258 agagatggggtggcggtggct-ccccttgccacccc-cagttccaccactggt 308  Q
    ||||||||||||||||||||| |||||||||||||| ||||||| ||||||||    
T  16497556 agagatggggtggcggtggctcccccttgccaccccgcagttccgccactggt 16497608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 260 - 306
Target Start/End: Original strand, 14125096 - 14125143
Alignment:
Q  260 agatggggtggcggtggctcccc-ttgccacccccagttccaccactg 306  Q
    ||||||||| ||||||||||||| ||||||||||||||||| ||||||    
T  14125096 agatggggtagcggtggctcccccttgccacccccagttccgccactg 14125143  T

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Target: scaffold1160 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: scaffold1160
Description:

Target: scaffold1160; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 46 - 111
Target Start/End: Complemental strand, 2439 - 2374
Alignment:
Q  46 gcggcggtgatggatggagaaggagaagagtggtcgcggctcgccggcagtggtgtggtggtggat 111  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||    
T  2439 gcggcggtgatggatggagaaggaggagagtggtcgcggctcaccggcggtggtgtggtggtggat 2374  T

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Target: scaffold0054 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 18 - 144
Target Start/End: Complemental strand, 2861 - 2734
Alignment:
Q  18 agaatcaatacagaagattgaggggggtgcggcggtgatggatggagaaggagaagagtggtcgcggctcgccggcagtggtgtggtggtggatgt--tg 115  Q
    |||||| | ||||||||| |||| |  ||| |||||||||||||||||||||| |||||||||||||||| || || |||||||||||||||||||  ||    
T  2861 agaatcgaaacagaagatggaggagtatgcagcggtgatggatggagaaggaggagagtggtcgcggctcaccagcggtggtgtggtggtggatgtaatg 2762  T
Q  116 ttcggtggttttgctttggctgggagaag 144  Q
    |||||| |  ||||||||| |||||||||    
T  2761 ttcggtcg-cttgctttggttgggagaag 2734  T

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Target: scaffold0285 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0285
Description:

Target: scaffold0285; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 8494 - 8589
Alignment:
Q  18 agaatcaatacagaagattgaggggggtgcggcggtgatggatggagaaggagaagagtggtcgcggctcgccggcagtggtgtggtggtggatgt 113  Q
    |||||| | ||||||||| |||| |  ||| || ||||||||||||||||||| |||||||||||||||| || || |||||||||||||||||||    
T  8494 agaatcgaaacagaagatggaggagtatgcagcagtgatggatggagaaggaggagagtggtcgcggctcaccagcggtggtgtggtggtggatgt 8589  T

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Target: scaffold0393 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 46 - 100
Target Start/End: Original strand, 11313 - 11367
Alignment:
Q  46 gcggcggtgatggatggagaaggagaagagtggtcgcggctcgccggcagtggtg 100  Q
    ||||||||||||||||||||||||| | |||||||||||||| ||| | ||||||    
T  11313 gcggcggtgatggatggagaaggaggaaagtggtcgcggctcaccgtcggtggtg 11367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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