View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20805_high_4 (Length: 435)
Name: NF20805_high_4
Description: NF20805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20805_high_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 403; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Complemental strand, 37704860 - 37704454
Alignment:
| Q |
1 |
accgatttgttataattaaataacttaaaagtatcgtaatttgctctttaaagtatgtacatttgaagaagtctaagtctccgattctaaatacaattaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37704860 |
accgatttgttataattaaataacttaaaagtctcgtaatttgctctttaaagtatgtacatttgaagaagtctaagtctccgattctaaatacaattaa |
37704761 |
T |
|
| Q |
101 |
tgttattttcttcatttcaggtgtatttttaagcacattactcactgtgattgctacttaaatgaatttgttatcttatcacaacttgaaataagattcc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37704760 |
tgttattttcttcatttcaggtgtatttttaagcacattactcactgtgattgctacttaaatgaatttgttatcttatcacaacttgaaataagattcc |
37704661 |
T |
|
| Q |
201 |
aactttcgtgctaattacgttcaaaaagtctggtcttcgaagatattatttagtttaatgaacaccaaacttttctatgatggttactgaattaatattg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37704660 |
aactttcgtgctaattacgttcaaaaagtctggtcttcgaagatattatttagtttaatgaacaccaaacttttctatgatggttactgaattaatattg |
37704561 |
T |
|
| Q |
301 |
ttgccaaatgtcatatcagtatatgtttatgaaaagcacccccaaaacaaaataagggaatacgtagactcaatttgcaaacaatctaataagtcaacct |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37704560 |
ttgccaaatgtcatatcagtatatgtttatgaaaagcacccccaaaacaaaataagggaatacgtagactcaatttgcaaacaatctaataagtcaacct |
37704461 |
T |
|
| Q |
401 |
ttttggt |
407 |
Q |
| |
|
||||||| |
|
|
| T |
37704460 |
ttttggt |
37704454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 43 - 406
Target Start/End: Complemental strand, 37699349 - 37698974
Alignment:
| Q |
43 |
gctctttaaagtatgtacatttgaagaagtctaagtctccgattctaaatacaattaatgtt------attttcttcatttcaggtgtatttttaagcac |
136 |
Q |
| |
|
|||||||||||| ||| || ||||||||||||||||||||| | |||||||||||||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
37699349 |
gctctttaaagtctgttcagttgaagaagtctaagtctccgttgctaaatacaattaatgttgttattattttcttcattttaggtgtatttttaagcaa |
37699250 |
T |
|
| Q |
137 |
attactcactgtgattgctacttaaatgaatttgttatcttat---cacaacttgaaataagattccaactttcgtgctaattacgttcaaaaagtct-g |
232 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||| |||||||| | |
|
|
| T |
37699249 |
attactcattctgattgctacttaaatgaatttgttatcttattatcacaacttgcaataagattccaactttagtgctaattacgttcgaaaagtcttg |
37699150 |
T |
|
| Q |
233 |
gtcttcgaagatattatttagtttaatgaacaccaaacttttctatgatggttactgaattaatattgttgccaaatgtcatatcagtatatgtttatga |
332 |
Q |
| |
|
|| ||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
37699149 |
gttttccaagatgttatttagtttaatgaacaccaaacttttctatgattgttactgaattaatattgttgccaaatgtcatatcagtatacggttatga |
37699050 |
T |
|
| Q |
333 |
aaagcacccccaaaacaaaataagggaatacgtagactcaa--tttgcaaacaatctaataagtcaacctttttgg |
406 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||||||| |||| |||||||||||||| |||| |||||||| |
|
|
| T |
37699049 |
aaagcacccccaacacaaaataagggaatacctagactcaatgtttgtaaacaatctaataactcaaactttttgg |
37698974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 103 - 407
Target Start/End: Complemental strand, 37437823 - 37437520
Alignment:
| Q |
103 |
ttattttcttcatttcaggtgtatttttaagcacattactcactgtgattgctacttaaatgaatttgttatcttat---cacaacttgaaataagattc |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
37437823 |
ttattttcttcatttcaggtgtatttttaagcaaattactcattctgattgctacttaaatgaatttgttatcttattatcacaacttgcaataagattc |
37437724 |
T |
|
| Q |
200 |
caactttcgtgctaattacgttcaaaaagtct-ggtcttcgaagatattatttagtttaatgaacaccaaacttttctatgatggttactgaattaatat |
298 |
Q |
| |
|
|||||| ||||||||||||| |||||||| ||||||| || || |||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
37437723 |
caactt----gctaattacgttcgaaaagtcttggtcttccaatatgttatttagtttaatgaacaccaaacttttctatgattgttattgaattaatat |
37437628 |
T |
|
| Q |
299 |
tgttgccaaatgtcatatcagtatatgtttatgaaaagcacccccaaaacaaaataagggaatacgtagactcaatttgcaaacaatctaataagtcaac |
398 |
Q |
| |
|
||||||||| |||||||||| |||| | |||||||||||| ||||| | |||| ||||||||| |||||| |||||| |||||||||||||||||| |
|
|
| T |
37437627 |
tgttgccaattgtcatatcactatacggttatgaaaagca-ccccacattaaaacaagggaatagctagactgaatttgtaaacaatctaataagtcaga |
37437529 |
T |
|
| Q |
399 |
ctttttggt |
407 |
Q |
| |
|
||||||||| |
|
|
| T |
37437528 |
ctttttggt |
37437520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 159 - 407
Target Start/End: Complemental strand, 37698864 - 37698636
Alignment:
| Q |
159 |
taaatgaatttgttatcttatcacaacttgaaataagattccaactttcgtgc----taattacgttcaaaaagtc-tggtcttcgaagatattatttag |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||| |||||||| |||||||| ||||| |||||||| |
|
|
| T |
37698864 |
taaatgaatttgttatcttatcacaacttgcaataagattccaactttagtgctaattaattacgttaaaaaagtcttggtcttccaagatgttatttag |
37698765 |
T |
|
| Q |
254 |
tttaatgaacaccaaacttttctatgatggttactgaattaatattgttgccaaatgtcatatcagtatatgtttatgaaaagcacccccaaaacaaaat |
353 |
Q |
| |
|
||||| ||||||||||||||| |||||| | |||||||||||||||| |||||||||| |||| | | |||||||| |
|
|
| T |
37698764 |
tttaacgaacaccaaacttttgtatgattg--------ttaatattgttgccaattgtcatatcactatacggt-----------------caacaaaat |
37698690 |
T |
|
| Q |
354 |
aagggaatacgtagactcaatttgcaaacaatctaataagtcaacctttttggt |
407 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
37698689 |
aagggaatacttagactcaatttgtaaacaatctaataagtcaaactttttggt |
37698636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 43 - 279
Target Start/End: Original strand, 16840857 - 16841109
Alignment:
| Q |
43 |
gctctttaaagtatgtacatttgaagaagtctaagtctccgattctaaatacaattaatgtt------attttcttcatttcaggtgtat----ttttaa |
132 |
Q |
| |
|
||||||||||||||| | | |||| |||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
16840857 |
gctctttaaagtatggatagttgacgaagtctaagtctccgcttctaaatacatttaatgttgttattattttcttcatttcaggtgtatatatttttaa |
16840956 |
T |
|
| Q |
133 |
gcacattactcactgtgattgctacttaaatgaatttgttatcttat------cacaacttgaaataagattccaactttcgtgctaattacgttcaaaa |
226 |
Q |
| |
|
||| |||| ||| |||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||| |
|
|
| T |
16840957 |
gcaaattattcattgtgattggtacttaaatgaatttgttatcttattaatatcacaacttgcaataagattccaactta-gtgctaattacgttcaaaa |
16841055 |
T |
|
| Q |
227 |
agtct-ggtcttcgaagatattatttagtttaatgaacaccaaacttttctatg |
279 |
Q |
| |
|
||||| ||||||| ||||| |||||||||||| | |||||||||||||| |||| |
|
|
| T |
16841056 |
agtcttggtcttccaagattttatttagtttattaaacaccaaacttttgtatg |
16841109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University