View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20805_high_5 (Length: 368)
Name: NF20805_high_5
Description: NF20805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20805_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 1e-97; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 160 - 355
Target Start/End: Original strand, 7553136 - 7553332
Alignment:
| Q |
160 |
gtatgtactaaactaaaggtgaaaatttgaagtccttgtaatcaaacaccattgcataggcttctagctaacactgaatgcagatgactccattaaaaca |
259 |
Q |
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| T |
7553136 |
gtatgtactaaactaaaggtgaaaatttgaattccttgtaatcaaacaccattgcataagcttctagctaacactgaatgcagatgactccattaaaaca |
7553235 |
T |
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| Q |
260 |
taggc-aaacaatgtttgtggtcatttacgtttgattctttccccgatttggtttttaaactttttatttgactaaattaatcctttgtgttaccct |
355 |
Q |
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| T |
7553236 |
taggcaaaacaatgtttgtggtcatttacgtttgattctttccccgatttggtttttaaactttttatttgactaaattaatcctttgtgttaccct |
7553332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 30 - 142
Target Start/End: Original strand, 35442988 - 35443100
Alignment:
| Q |
30 |
atttaaccacttattttacataaatatatgtatttttagcattttgtaaccaaacaaaccctatctactatttactaatcaaaaaataaaacctcattct |
129 |
Q |
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| T |
35442988 |
atttaaccacttattttaaataaatatatgtatttttagcattttgtaaccaaacaaaccctatctactatttactaatcaaaaaataaaacctcattct |
35443087 |
T |
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| Q |
130 |
atactaaacttcc |
142 |
Q |
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| T |
35443088 |
atacaaaatttcc |
35443100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 64
Target Start/End: Complemental strand, 16780358 - 16780329
Alignment:
| Q |
35 |
accacttattttacataaatatatgtattt |
64 |
Q |
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| T |
16780358 |
accacttattttacataaatatatgtattt |
16780329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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