View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20805_low_1 (Length: 256)
Name: NF20805_low_1
Description: NF20805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20805_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 23 - 254
Target Start/End: Complemental strand, 29829550 - 29829319
Alignment:
| Q |
23 |
actatttttctcttttacaaggaaggatcagtgaattgaatatcctccaagctacttttgtgattgagtacattgattccgctttttatacgaattgatt |
122 |
Q |
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| T |
29829550 |
actatttttctcttttacaaggaaggatcagtgaattgaatatcctccaagctacttttgtgattgagtacattgattccgctttttatacgaattgatt |
29829451 |
T |
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| Q |
123 |
ttatctttgaacctgcatacctaacctctgcatggagccattcattttttaaaacattcccatctttgtccagtatagatttgagactcttgtcatgcaa |
222 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
29829450 |
tcatctttgaacctgcatacctaacctctgcatggagccattcattttttaaaacatttccatctttgtccagtatagatttgagactcttgtcatgcag |
29829351 |
T |
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| Q |
223 |
ttgcaaatcaaacacatgcctatggtactgct |
254 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
29829350 |
ttgcaaatcaaacacatgcctatggtactgct |
29829319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 23 - 254
Target Start/End: Original strand, 29841922 - 29842143
Alignment:
| Q |
23 |
actatttttctctttt-acaaggaaggatcagtgaattgaatatcctccaagctacttttgtgattgagtacattgattccgctttttatacgaattgat |
121 |
Q |
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|||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
29841922 |
actatttttctctttttacaaggaaggatcggtgaattgaatatcctccaagctacttttgtgattgagtacatggattccgctttttatacgaattgat |
29842021 |
T |
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| Q |
122 |
tttatctttgaacctgcatacctaacctctgcatggagccattcatttt-ttaaaacattcccatctttgtccagtatagatttgagactcttgtcatgc |
220 |
Q |
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|| || |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
29842022 |
ttcat------------atacctaacctctgcatggagccattcatttttttaaaacatttccatctttgtccagtatagatttgagactcttgtcatgc |
29842109 |
T |
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| Q |
221 |
aattgcaaatcaaacacatgcctatggtactgct |
254 |
Q |
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| T |
29842110 |
agttgcaaatcaaacacatgcctatggtactgct |
29842143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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